| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.27 | 0.038 | 0.428 | 0.09 |
| 1 | 0.27 < nsp <= 0.86 | 0.035 | 0.174 | 0.20 |
| 2 | 0.86 < nsp <= 1.55 | 0.060 | 0.105 | 0.57 |
| 3 | 1.55 < nsp <= 2.47 | 0.076 | 0.083 | 0.92 |
| 4 | 2.47 < nsp <= 3.82 | 0.090 | 0.061 | 1.48 |
| 5 | 3.82 < nsp <= 5.70 | 0.100 | 0.049 | 2.05 |
| 6 | 5.70 < nsp <= 8.67 | 0.126 | 0.039 | 3.22 |
| 7 | 8.67 < nsp <= 14.29 | 0.146 | 0.027 | 5.41 |
| 8 | 14.29 < nsp <= 24.87 | 0.153 | 0.017 | 9.08 |
| 9 | 24.87 < nsp < inf | 0.175 | 0.017 | 10.24 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.433 | 0.000 | 1709 | 0 |
| 0.99 | 0.694 | 0.000 | 2741 | 0 |
| 0.98 | 0.852 | 0.002 | 3367 | 8 |
| 0.97 | 0.868 | 0.003 | 3428 | 9 |
| 0.96 | 0.876 | 0.003 | 3461 | 11 |
| 0.95 | 0.883 | 0.003 | 3488 | 12 |
| 0.90 | 0.907 | 0.005 | 3582 | 19 |
| 0.80 | 0.940 | 0.011 | 3712 | 42 |
| 0.70 | 0.958 | 0.017 | 3785 | 67 |
| 0.60 | 0.975 | 0.026 | 3854 | 103 |
| 0.50 | 0.992 | 0.039 | 3919 | 157 |
| 0.40 | 1.000 | 0.046 | 3951 | 192 |
| 0.30 | 1.000 | 0.046 | 3951 | 192 |
| 0.20 | 1.000 | 0.046 | 3951 | 192 |
| 0.10 | 1.000 | 0.046 | 3951 | 192 |
| 0.00 | 1.000 | 0.046 | 3951 | 192 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1709 | 0 |
| 0.0001 | 0.9905 | 2740 | 0 |
| 0.0016 | 0.9890 | 3180 | 5 |
| 0.0021 | 0.9857 | 3306 | 7 |
| 0.0025 | 0.9760 | 3397 | 9 |
| 0.0030 | 0.9623 | 3458 | 10 |
| 0.0041 | 0.9330 | 3529 | 14 |
| 0.0050 | 0.9090 | 3571 | 18 |
| 0.0060 | 0.8852 | 3603 | 22 |
| 0.0070 | 0.8651 | 3630 | 26 |
| 0.0081 | 0.8474 | 3654 | 30 |
| 0.0091 | 0.8320 | 3674 | 34 |
| 0.0101 | 0.8132 | 3692 | 38 |
| 0.0150 | 0.7314 | 3763 | 57 |
| 0.0200 | 0.6642 | 3810 | 78 |
| 0.0251 | 0.6126 | 3847 | 99 |
| 0.0302 | 0.5643 | 3878 | 121 |
| 0.0400 | 0.4907 | 3925 | 164 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 21871 |
| num_input_3_spectra | 14179 |
| num_input_4_spectra | 2486 |
| num_input_5_spectra | 231 |
| num_predicted_correct_prots | 3950.7 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_28.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_28.pep.xml |
| total_no_spectrum_ids | 38403.9 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T13:36:46 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 5 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 13:36:54 2017 |