| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.28 | 0.040 | 0.443 | 0.09 |
| 1 | 0.28 < nsp <= 0.89 | 0.037 | 0.180 | 0.20 |
| 2 | 0.89 < nsp <= 1.66 | 0.062 | 0.109 | 0.57 |
| 3 | 1.66 < nsp <= 2.67 | 0.078 | 0.076 | 1.04 |
| 4 | 2.67 < nsp <= 3.99 | 0.094 | 0.057 | 1.64 |
| 5 | 3.99 < nsp <= 5.99 | 0.105 | 0.047 | 2.21 |
| 6 | 5.99 < nsp <= 8.97 | 0.123 | 0.035 | 3.53 |
| 7 | 8.97 < nsp <= 14.96 | 0.140 | 0.024 | 5.80 |
| 8 | 14.96 < nsp <= 26.82 | 0.151 | 0.015 | 10.04 |
| 9 | 26.82 < nsp < inf | 0.171 | 0.014 | 12.13 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.439 | 0.000 | 1780 | 0 |
| 0.99 | 0.693 | 0.000 | 2812 | 0 |
| 0.98 | 0.861 | 0.002 | 3494 | 9 |
| 0.97 | 0.879 | 0.003 | 3565 | 10 |
| 0.96 | 0.888 | 0.003 | 3605 | 12 |
| 0.95 | 0.894 | 0.004 | 3629 | 13 |
| 0.90 | 0.916 | 0.005 | 3718 | 20 |
| 0.80 | 0.939 | 0.009 | 3810 | 36 |
| 0.70 | 0.958 | 0.016 | 3887 | 62 |
| 0.60 | 0.975 | 0.024 | 3956 | 99 |
| 0.50 | 0.991 | 0.037 | 4021 | 154 |
| 0.40 | 1.000 | 0.046 | 4058 | 194 |
| 0.30 | 1.000 | 0.046 | 4058 | 194 |
| 0.20 | 1.000 | 0.046 | 4058 | 194 |
| 0.10 | 1.000 | 0.046 | 4058 | 194 |
| 0.00 | 1.000 | 0.046 | 4058 | 194 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1780 | 0 |
| 0.0017 | 0.9889 | 3299 | 6 |
| 0.0020 | 0.9867 | 3396 | 7 |
| 0.0025 | 0.9791 | 3504 | 9 |
| 0.0030 | 0.9663 | 3581 | 11 |
| 0.0040 | 0.9366 | 3658 | 15 |
| 0.0050 | 0.9067 | 3705 | 19 |
| 0.0060 | 0.8784 | 3737 | 23 |
| 0.0070 | 0.8576 | 3764 | 27 |
| 0.0080 | 0.8320 | 3786 | 31 |
| 0.0090 | 0.8093 | 3804 | 35 |
| 0.0100 | 0.7826 | 3820 | 39 |
| 0.0151 | 0.7092 | 3881 | 60 |
| 0.0201 | 0.6431 | 3925 | 81 |
| 0.0250 | 0.5962 | 3959 | 102 |
| 0.0300 | 0.5444 | 3989 | 123 |
| 0.0401 | 0.4771 | 4036 | 168 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 22554 |
| num_input_3_spectra | 13088 |
| num_input_4_spectra | 2401 |
| num_input_5_spectra | 283 |
| num_predicted_correct_prots | 4057.6 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_28A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_28A.pep.xml |
| total_no_spectrum_ids | 37975.5 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T13:33:21 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 13:33:30 2017 |