+1 Models | |
---|---|
comments | using training data negative distributions |
est_tot_correct | 0.0 |
num_iterations | 21 |
prior_probability | 0.000 |
tot_num_spectra | 0 |
Comet discrim score [fval] negmean: 1.00 | |
pos model | gaussian (mean 2.00, stdev 0.40) |
neg model | gaussian (mean 0.00, stdev 3.16) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
Accurate Mass Model | |
neg_bandwidth | 0.010692 |
pos_bandwidth | 0.010692 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
+2 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 22228.5 |
num_iterations | 27 |
prior_probability | 0.700 |
tot_num_spectra | 40560 |
Comet discrim score [fval] negmean: -2.02 | |
pos model | gaussian (mean 2.96, stdev 2.10) |
neg model | gaussian (mean -0.91, stdev 1.11) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.023, ntt=2 0.976) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.943, 1<=nmc<=2 0.057, nmc>=3 0.000) |
neg model | (nmc=0 0.494, 1<=nmc<=2 0.504, nmc>=3 0.002) |
Accurate Mass Model | |
neg_bandwidth | 0.010692 |
pos_bandwidth | 0.010692 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.029, 0 0.862, 1 0.102, 2 0.007, 3 0.000) |
neg model | (-3 0.000, -2 0.000, -1 0.313, 0 0.314, 1 0.165, 2 0.114, 3 0.094) |
+3 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 16230.9 |
num_iterations | 27 |
prior_probability | 0.605 |
tot_num_spectra | 36652 |
Comet discrim score [fval] negmean: -1.57 | |
pos model | gaussian (mean 4.12, stdev 2.46) |
neg model | gaussian (mean -0.52, stdev 1.05) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.021, ntt=2 0.979) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.821, 1<=nmc<=2 0.179, nmc>=3 0.000) |
neg model | (nmc=0 0.292, 1<=nmc<=2 0.700, nmc>=3 0.008) |
Accurate Mass Model | |
neg_bandwidth | 0.010692 |
pos_bandwidth | 0.010692 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.023, 0 0.775, 1 0.153, 2 0.042, 3 0.008) |
neg model | (-3 0.000, -2 0.000, -1 0.235, 0 0.229, 1 0.197, 2 0.178, 3 0.162) |
+4 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 3111.3 |
num_iterations | 27 |
prior_probability | 0.494 |
tot_num_spectra | 9207 |
Comet discrim score [fval] negmean: -2.03 | |
pos model | gaussian (mean 1.96, stdev 1.51) |
neg model | gaussian (mean -1.22, stdev 0.80) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.021, ntt=2 0.979) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.676, 1<=nmc<=2 0.324, nmc>=3 0.000) |
neg model | (nmc=0 0.194, 1<=nmc<=2 0.789, nmc>=3 0.017) |
Accurate Mass Model | |
neg_bandwidth | 0.010692 |
pos_bandwidth | 0.010692 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.016, 0 0.786, 1 0.152, 2 0.040, 3 0.006) |
neg model | (-3 0.000, -2 0.000, -1 0.221, 0 0.221, 1 0.206, 2 0.183, 3 0.169) |
+5 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 343.4 |
num_iterations | 27 |
prior_probability | 0.329 |
tot_num_spectra | 1759 |
Comet discrim score [fval] negmean: -2.91 | |
pos model | gaussian (mean 2.04, stdev 1.41) |
neg model | gaussian (mean -1.72, stdev 1.19) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.001, ntt=1 0.023, ntt=2 0.976) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.573, 1<=nmc<=2 0.427, nmc>=3 0.000) |
neg model | (nmc=0 0.148, 1<=nmc<=2 0.825, nmc>=3 0.027) |
Accurate Mass Model | |
neg_bandwidth | 0.010692 |
pos_bandwidth | 0.010692 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.009, 0 0.816, 1 0.153, 2 0.018, 3 0.004) |
neg model | (-3 0.000, -2 0.000, -1 0.223, 0 0.186, 1 0.205, 2 0.190, 3 0.196) |
+6 Models | |
comments | using training data negative distributions |
est_tot_correct | 0.0 |
num_iterations | 21 |
prior_probability | 0.000 |
tot_num_spectra | 0 |
Comet discrim score [fval] negmean: -5.00 | |
pos model | gaussian (mean 4.56, stdev 1.24) |
neg model | gaussian (mean 0.00, stdev 3.16) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
Accurate Mass Model | |
neg_bandwidth | 0.010692 |
pos_bandwidth | 0.010692 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
+7 Models | |
comments | using training data negative distributions |
est_tot_correct | 0.0 |
num_iterations | 21 |
prior_probability | 0.000 |
tot_num_spectra | 0 |
Comet discrim score [fval] negmean: -5.00 | |
pos model | gaussian (mean 4.56, stdev 1.24) |
neg model | gaussian (mean 0.00, stdev 3.16) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
Accurate Mass Model | |
neg_bandwidth | 0.010692 |
pos_bandwidth | 0.010692 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
MS run: /home/sean/Documents/proteome/20161205_Sample_3 | |
---|---|
msManufacturer | Thermo |
msModel | Orbitrap Fusion Lumos |
raw_data | .mzXML |
raw_data_type | raw |
sample_enzyme | |
name | trypsin |
specificity | cut: KR no_cut: P sense: C |
search_summary | |
base_name | /home/sean/Documents/proteome/20161205_Sample_3 |
fragment_mass_type | monoisotopic |
precursor_mass_type | monoisotopic |
search_engine | Comet |
search_engine_version | 2016.01 rev. 2 |
search_id | 1 |
search_database | |
local_path | Cg-Giga_cont_AA.fa |
type | AA |
enzymatic_search_constraint | |
enzyme | Trypsin |
max_num_internal_cleavages | 2 |
min_number_termini | 2 |
Aminoacid and Terminal Modifications | |
M | mass: 147.035385 massdiff: 15.994900 symbol: * variable: Y |
C | mass: 160.030649 massdiff: 57.021464 variable: N |
Search Parameters | |
# comet_version | 2016.01 rev. 0 |
activation_method | ALL |
add_A_alanine | 0.000000 |
add_B_user_amino_acid | 0.000000 |
add_C_cysteine | 57.021464 |
add_Cterm_peptide | 0.000000 |
add_Cterm_protein | 0.000000 |
add_D_aspartic_acid | 0.000000 |
add_E_glutamic_acid | 0.000000 |
add_F_phenylalanine | 0.000000 |
add_G_glycine | 0.000000 |
add_H_histidine | 0.000000 |
add_I_isoleucine | 0.000000 |
add_J_user_amino_acid | 0.000000 |
add_K_lysine | 0.000000 |
add_L_leucine | 0.000000 |
add_M_methionine | 0.000000 |
add_N_asparagine | 0.000000 |
add_Nterm_peptide | 0.000000 |
add_Nterm_protein | 0.000000 |
add_O_ornithine | 0.000000 |
add_P_proline | 0.000000 |
add_Q_glutamine | 0.000000 |
add_R_arginine | 0.000000 |
add_S_serine | 0.000000 |
add_T_threonine | 0.000000 |
add_U_celenocysteinee | 0.000000 |
add_V_valine | 0.000000 |
add_W_tryptophan | 0.000000 |
add_X_user_amino_acid | 0.000000 |
add_Y_tyrosine | 0.000000 |
add_Z_user_amino_acid | 0.000000 |
allowed_missed_cleavage | 2 |
clear_mz_range | 0.000000 0.000000 |
clip_nterm_methionine | 0 |
database_name | Cg-Giga_cont_AA.fa |
decoy_prefix | DECOY_ |
decoy_search | 1 |
digest_mass_range | 600.000000 5000.000000 |
fragment_bin_offset | 0.400000 |
fragment_bin_tol | 1.000500 |
isotope_error | 1 |
mass_offsets | |
mass_type_fragment | 1 |
mass_type_parent | 1 |
max_fragment_charge | 3 |
max_precursor_charge | 6 |
max_variable_mods_in_peptide | 5 |
minimum_intensity | 0 |
minimum_peaks | 10 |
ms_level | 2 |
nucleotide_reading_frame | 0 |
num_enzyme_termini | 2 |
num_output_lines | 5 |
num_results | 100 |
num_threads | 8 |
output_outfiles | 0 |
output_pepxmlfile | 1 |
output_percolatorfile | 0 |
output_sqtfile | 0 |
output_sqtstream | 0 |
output_suffix | |
output_txtfile | 0 |
override_charge | 0 |
peptide_mass_tolerance | 20.000000 |
peptide_mass_units | 2 |
precursor_charge | 0 0 |
precursor_tolerance_type | 1 |
print_expect_score | 1 |
remove_precursor_peak | 0 |
remove_precursor_tolerance | 1.500000 |
require_variable_mod | 0 |
sample_enzyme_number | 1 |
scan_range | 0 0 |
search_enzyme_number | 1 |
show_fragment_ions | 0 |
skip_researching | 1 |
spectrum_batch_size | 0 |
theoretical_fragment_ions | 1 |
use_A_ions | 0 |
use_B_ions | 1 |
use_C_ions | 0 |
use_NL_ions | 0 |
use_X_ions | 0 |
use_Y_ions | 1 |
use_Z_ions | 0 |
variable_mod01 | 15.994900 M 0 3 -1 0 0 |
variable_mod02 | 0.000000 X 0 3 -1 0 0 |
variable_mod03 | 0.000000 X 0 3 -1 0 0 |
variable_mod04 | 0.000000 X 0 3 -1 0 0 |
variable_mod05 | 0.000000 X 0 3 -1 0 0 |
variable_mod06 | 0.000000 X 0 3 -1 0 0 |
variable_mod07 | 0.000000 X 0 3 -1 0 0 |
variable_mod08 | 0.000000 X 0 3 -1 0 0 |
variable_mod09 | 0.000000 X 0 3 -1 0 0 |
Analysis Timestamps | |
peptideprophet | 2017-02-20T13:58:40 (id: 1) |
database_refresh | 2017-02-20T13:58:29 (id: 1) |
database | Cg-Giga_cont_AA.fa |
min_num_enz_term | 0 |
Predicted Sensitivity and Error Rate | ||||
min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
---|---|---|---|---|
0.9999 | 0.5464 | 0.0000 | 22904 | 0 |
0.9990 | 0.6350 | 0.0001 | 26617 | 2 |
0.9900 | 0.7439 | 0.0007 | 31180 | 21 |
0.9800 | 0.7814 | 0.0013 | 32753 | 44 |
0.9500 | 0.8348 | 0.0034 | 34988 | 121 |
0.9000 | 0.8771 | 0.0070 | 36761 | 260 |
0.8500 | 0.9040 | 0.0109 | 37889 | 419 |
0.8000 | 0.9219 | 0.0147 | 38639 | 577 |
0.7500 | 0.9367 | 0.0189 | 39261 | 757 |
0.7000 | 0.9486 | 0.0232 | 39760 | 946 |
0.6500 | 0.9561 | 0.0266 | 40072 | 1094 |
0.6000 | 0.9609 | 0.0293 | 40276 | 1217 |
0.5500 | 0.9655 | 0.0324 | 40467 | 1357 |
0.5000 | 0.9691 | 0.0355 | 40619 | 1496 |
0.4500 | 0.9730 | 0.0395 | 40782 | 1676 |
0.4000 | 0.9766 | 0.0439 | 40934 | 1880 |
0.3500 | 0.9796 | 0.0483 | 41058 | 2085 |
0.3000 | 0.9827 | 0.0541 | 41187 | 2357 |
0.2500 | 0.9857 | 0.0612 | 41315 | 2695 |
0.2000 | 0.9887 | 0.0703 | 41441 | 3133 |
0.1500 | 0.9917 | 0.0823 | 41568 | 3730 |
0.1000 | 0.9946 | 0.0990 | 41687 | 4581 |
0.0500 | 0.9974 | 0.1268 | 41803 | 6070 |
0.0000 | 1.0000 | 0.5247 | 41914 | 46264 |
+2 only | ||||
0.9999 | 0.5059 | 0.0000 | 11245 | 0 |
0.9990 | 0.6067 | 0.0001 | 13486 | 1 |
0.9900 | 0.7339 | 0.0008 | 16313 | 13 |
0.9800 | 0.7767 | 0.0016 | 17265 | 27 |
0.9500 | 0.8370 | 0.0039 | 18604 | 73 |
0.9000 | 0.8849 | 0.0079 | 19671 | 156 |
0.8500 | 0.9134 | 0.0120 | 20303 | 246 |
0.8000 | 0.9330 | 0.0160 | 20738 | 337 |
0.7500 | 0.9471 | 0.0199 | 21052 | 427 |
0.7000 | 0.9577 | 0.0237 | 21288 | 517 |
0.6500 | 0.9640 | 0.0265 | 21429 | 583 |
0.6000 | 0.9683 | 0.0289 | 21523 | 640 |
0.5500 | 0.9720 | 0.0315 | 21607 | 702 |
0.5000 | 0.9749 | 0.0339 | 21671 | 761 |
0.4500 | 0.9781 | 0.0371 | 21742 | 838 |
0.4000 | 0.9809 | 0.0406 | 21804 | 923 |
0.3500 | 0.9832 | 0.0440 | 21855 | 1007 |
0.3000 | 0.9858 | 0.0488 | 21912 | 1125 |
0.2500 | 0.9884 | 0.0551 | 21971 | 1280 |
0.2000 | 0.9905 | 0.0616 | 22018 | 1446 |
0.1500 | 0.9930 | 0.0717 | 22073 | 1705 |
0.1000 | 0.9957 | 0.0877 | 22132 | 2128 |
0.0500 | 0.9979 | 0.1113 | 22182 | 2778 |
0.0000 | 1.0000 | 0.4520 | 22228 | 18332 |
+3 only | ||||
0.9999 | 0.6098 | 0.0000 | 9898 | 0 |
0.9990 | 0.6800 | 0.0001 | 11036 | 1 |
0.9900 | 0.7634 | 0.0005 | 12391 | 6 |
0.9800 | 0.7933 | 0.0010 | 12876 | 13 |
0.9500 | 0.8365 | 0.0027 | 13577 | 37 |
0.9000 | 0.8720 | 0.0058 | 14154 | 83 |
0.8500 | 0.8968 | 0.0095 | 14555 | 140 |
0.8000 | 0.9132 | 0.0131 | 14823 | 196 |
0.7500 | 0.9292 | 0.0177 | 15082 | 271 |
0.7000 | 0.9429 | 0.0227 | 15304 | 356 |
0.6500 | 0.9514 | 0.0265 | 15443 | 421 |
0.6000 | 0.9568 | 0.0296 | 15529 | 473 |
0.5500 | 0.9615 | 0.0328 | 15606 | 529 |
0.5000 | 0.9654 | 0.0361 | 15669 | 586 |
0.4500 | 0.9698 | 0.0406 | 15740 | 666 |
0.4000 | 0.9740 | 0.0457 | 15809 | 757 |
0.3500 | 0.9772 | 0.0505 | 15860 | 844 |
0.3000 | 0.9805 | 0.0566 | 15914 | 955 |
0.2500 | 0.9837 | 0.0641 | 15966 | 1094 |
0.2000 | 0.9875 | 0.0755 | 16028 | 1310 |
0.1500 | 0.9911 | 0.0895 | 16086 | 1582 |
0.1000 | 0.9938 | 0.1052 | 16130 | 1896 |
0.0500 | 0.9969 | 0.1360 | 16181 | 2548 |
0.0000 | 1.0000 | 0.5572 | 16231 | 20421 |
+4 only | ||||
0.9999 | 0.5319 | 0.0000 | 1655 | 0 |
0.9990 | 0.6216 | 0.0001 | 1934 | 0 |
0.9900 | 0.7243 | 0.0007 | 2254 | 1 |
0.9800 | 0.7623 | 0.0014 | 2372 | 3 |
0.9500 | 0.8183 | 0.0036 | 2546 | 9 |
0.9000 | 0.8549 | 0.0068 | 2660 | 18 |
0.8500 | 0.8806 | 0.0105 | 2740 | 29 |
0.8000 | 0.8939 | 0.0134 | 2781 | 38 |
0.7500 | 0.9076 | 0.0175 | 2824 | 50 |
0.7000 | 0.9192 | 0.0219 | 2860 | 64 |
0.6500 | 0.9279 | 0.0260 | 2887 | 77 |
0.6000 | 0.9347 | 0.0300 | 2908 | 90 |
0.5500 | 0.9432 | 0.0359 | 2935 | 109 |
0.5000 | 0.9506 | 0.0422 | 2958 | 130 |
0.4500 | 0.9567 | 0.0484 | 2977 | 151 |
0.4000 | 0.9621 | 0.0549 | 2993 | 174 |
0.3500 | 0.9679 | 0.0634 | 3011 | 204 |
0.3000 | 0.9738 | 0.0740 | 3030 | 242 |
0.2500 | 0.9787 | 0.0850 | 3045 | 283 |
0.2000 | 0.9832 | 0.0979 | 3059 | 332 |
0.1500 | 0.9871 | 0.1124 | 3071 | 389 |
0.1000 | 0.9918 | 0.1376 | 3086 | 492 |
0.0500 | 0.9958 | 0.1747 | 3098 | 656 |
0.0000 | 1.0000 | 0.6621 | 3111 | 6096 |
+5 only | ||||
0.9999 | 0.3087 | 0.0000 | 106 | 0 |
0.9990 | 0.4687 | 0.0002 | 161 | 0 |
0.9900 | 0.6485 | 0.0013 | 223 | 0 |
0.9800 | 0.7001 | 0.0024 | 240 | 1 |
0.9500 | 0.7618 | 0.0052 | 262 | 1 |
0.9000 | 0.8051 | 0.0090 | 277 | 2 |
0.8500 | 0.8457 | 0.0155 | 290 | 5 |
0.8000 | 0.8649 | 0.0198 | 297 | 6 |
0.7500 | 0.8851 | 0.0258 | 304 | 8 |
0.7000 | 0.8957 | 0.0297 | 308 | 9 |
0.6500 | 0.9132 | 0.0380 | 314 | 12 |
0.6000 | 0.9205 | 0.0421 | 316 | 14 |
0.5500 | 0.9305 | 0.0489 | 320 | 16 |
0.5000 | 0.9366 | 0.0540 | 322 | 18 |
0.4500 | 0.9422 | 0.0594 | 324 | 20 |
0.4000 | 0.9548 | 0.0738 | 328 | 26 |
0.3500 | 0.9634 | 0.0861 | 331 | 31 |
0.3000 | 0.9671 | 0.0926 | 332 | 34 |
0.2500 | 0.9711 | 0.1011 | 334 | 37 |
0.2000 | 0.9778 | 0.1187 | 336 | 45 |
0.1500 | 0.9835 | 0.1384 | 338 | 54 |
0.1000 | 0.9876 | 0.1605 | 339 | 65 |
0.0500 | 0.9930 | 0.2069 | 341 | 89 |
0.0000 | 1.0000 | 0.8048 | 343 | 1416 |
Error Table | |||
Error_Rate | min_prob | num_correct | num_incorrect |
---|---|---|---|
0.0000 | 1.0000 | 7370 | 0 |
0.0001 | 0.9986 | 27182 | 3 |
0.0002 | 0.9971 | 28631 | 6 |
0.0003 | 0.9956 | 29496 | 9 |
0.0004 | 0.9939 | 30109 | 12 |
0.0005 | 0.9923 | 30582 | 15 |
0.0006 | 0.9908 | 30968 | 19 |
0.0007 | 0.9893 | 31302 | 22 |
0.0008 | 0.9878 | 31594 | 25 |
0.0009 | 0.9864 | 31853 | 29 |
0.0010 | 0.9849 | 32089 | 32 |
0.0015 | 0.9778 | 33016 | 50 |
0.0020 | 0.9701 | 33693 | 68 |
0.0025 | 0.9628 | 34222 | 86 |
0.0030 | 0.9556 | 34660 | 104 |
0.0040 | 0.9420 | 35362 | 142 |
0.0050 | 0.9277 | 35918 | 181 |
0.0060 | 0.9141 | 36370 | 220 |
0.0070 | 0.9002 | 36756 | 259 |
0.0080 | 0.8870 | 37093 | 299 |
0.0090 | 0.8749 | 37391 | 340 |
0.0100 | 0.8624 | 37661 | 381 |
0.0150 | 0.7966 | 38688 | 590 |
0.0200 | 0.7367 | 39399 | 804 |
0.0250 | 0.6787 | 39934 | 1025 |
0.0300 | 0.5892 | 40322 | 1247 |
0.0400 | 0.4452 | 40803 | 1701 |
0.0500 | 0.3321 | 41099 | 2164 |
0.0750 | 0.1793 | 41496 | 3366 |
0.1000 | 0.0977 | 41693 | 4634 |
+2 only | |||
0.0000 | 1.0000 | 3912 | 0 |
0.0001 | 0.9988 | 13618 | 1 |
0.0002 | 0.9976 | 14505 | 3 |
0.0003 | 0.9963 | 15038 | 5 |
0.0004 | 0.9950 | 15425 | 6 |
0.0005 | 0.9936 | 15721 | 8 |
0.0006 | 0.9921 | 15961 | 10 |
0.0007 | 0.9909 | 16166 | 11 |
0.0008 | 0.9897 | 16347 | 13 |
0.0009 | 0.9882 | 16505 | 15 |
0.0010 | 0.9870 | 16648 | 17 |
0.0015 | 0.9807 | 17213 | 26 |
0.0020 | 0.9744 | 17627 | 35 |
0.0025 | 0.9674 | 17949 | 45 |
0.0030 | 0.9613 | 18216 | 55 |
0.0040 | 0.9483 | 18644 | 75 |
0.0050 | 0.9368 | 18983 | 95 |
0.0060 | 0.9230 | 19260 | 116 |
0.0070 | 0.9106 | 19494 | 138 |
0.0080 | 0.8984 | 19697 | 159 |
0.0090 | 0.8841 | 19875 | 181 |
0.0100 | 0.8731 | 20033 | 203 |
0.0150 | 0.8136 | 20646 | 315 |
0.0200 | 0.7477 | 21061 | 430 |
0.0250 | 0.6792 | 21359 | 548 |
0.0300 | 0.5794 | 21562 | 668 |
0.0400 | 0.4105 | 21795 | 909 |
0.0500 | 0.2892 | 21924 | 1155 |
0.0750 | 0.1382 | 22087 | 1792 |
0.1000 | 0.0691 | 22163 | 2464 |
+3 only | |||
0.0000 | 1.0000 | 2865 | 0 |
0.0001 | 0.9981 | 11390 | 1 |
0.0002 | 0.9961 | 11826 | 2 |
0.0003 | 0.9939 | 12079 | 4 |
0.0004 | 0.9918 | 12259 | 5 |
0.0005 | 0.9899 | 12399 | 6 |
0.0006 | 0.9882 | 12516 | 8 |
0.0007 | 0.9863 | 12619 | 9 |
0.0008 | 0.9845 | 12709 | 10 |
0.0009 | 0.9825 | 12789 | 12 |
0.0010 | 0.9803 | 12862 | 13 |
0.0015 | 0.9713 | 13144 | 20 |
0.0020 | 0.9617 | 13349 | 27 |
0.0025 | 0.9529 | 13509 | 34 |
0.0030 | 0.9447 | 13644 | 41 |
0.0040 | 0.9284 | 13862 | 56 |
0.0050 | 0.9125 | 14034 | 71 |
0.0060 | 0.8981 | 14177 | 86 |
0.0070 | 0.8847 | 14302 | 101 |
0.0080 | 0.8702 | 14414 | 116 |
0.0090 | 0.8563 | 14512 | 132 |
0.0100 | 0.8419 | 14600 | 148 |
0.0150 | 0.7776 | 14940 | 228 |
0.0200 | 0.7258 | 15192 | 310 |
0.0250 | 0.6787 | 15392 | 395 |
0.0300 | 0.5924 | 15542 | 481 |
0.0400 | 0.4558 | 15733 | 656 |
0.0500 | 0.3545 | 15856 | 835 |
0.0750 | 0.2019 | 16026 | 1301 |
0.1000 | 0.1133 | 16118 | 1792 |
+4 only | |||
0.0000 | 1.0000 | 541 | 0 |
0.0001 | 0.9986 | 1975 | 0 |
0.0002 | 0.9971 | 2078 | 0 |
0.0003 | 0.9954 | 2138 | 1 |
0.0004 | 0.9935 | 2180 | 1 |
0.0005 | 0.9922 | 2213 | 1 |
0.0006 | 0.9908 | 2241 | 1 |
0.0007 | 0.9892 | 2265 | 2 |
0.0008 | 0.9879 | 2286 | 2 |
0.0009 | 0.9865 | 2305 | 2 |
0.0010 | 0.9847 | 2323 | 2 |
0.0015 | 0.9781 | 2390 | 4 |
0.0020 | 0.9716 | 2441 | 5 |
0.0025 | 0.9641 | 2481 | 6 |
0.0030 | 0.9589 | 2514 | 8 |
0.0040 | 0.9416 | 2569 | 10 |
0.0050 | 0.9257 | 2609 | 13 |
0.0060 | 0.9096 | 2640 | 16 |
0.0070 | 0.8964 | 2666 | 19 |
0.0080 | 0.8871 | 2690 | 22 |
0.0090 | 0.8770 | 2712 | 25 |
0.0100 | 0.8560 | 2732 | 28 |
0.0150 | 0.7791 | 2800 | 43 |
0.0200 | 0.7208 | 2846 | 58 |
0.0250 | 0.6662 | 2882 | 74 |
0.0300 | 0.5983 | 2909 | 91 |
0.0400 | 0.5174 | 2951 | 123 |
0.0500 | 0.4390 | 2981 | 158 |
0.0750 | 0.2956 | 3032 | 246 |
0.1000 | 0.1953 | 3061 | 342 |
+5 only | |||
0.0000 | 1.0000 | 58 | 0 |
0.0001 | 0.9995 | 141 | 0 |
0.0002 | 0.9988 | 164 | 0 |
0.0003 | 0.9980 | 177 | 0 |
0.0004 | 0.9972 | 186 | 0 |
0.0005 | 0.9965 | 193 | 0 |
0.0006 | 0.9960 | 199 | 0 |
0.0007 | 0.9948 | 204 | 0 |
0.0008 | 0.9941 | 209 | 0 |
0.0009 | 0.9935 | 212 | 0 |
0.0010 | 0.9927 | 216 | 0 |
0.0015 | 0.9859 | 229 | 0 |
0.0020 | 0.9831 | 237 | 0 |
0.0025 | 0.9763 | 243 | 1 |
0.0030 | 0.9690 | 248 | 1 |
0.0040 | 0.9568 | 256 | 1 |
0.0050 | 0.9513 | 262 | 1 |
0.0060 | 0.9412 | 267 | 2 |
0.0070 | 0.9334 | 271 | 2 |
0.0080 | 0.9167 | 275 | 2 |
0.0090 | 0.8999 | 278 | 3 |
0.0100 | 0.8854 | 281 | 3 |
0.0150 | 0.8566 | 290 | 5 |
0.0200 | 0.7999 | 299 | 6 |
0.0250 | 0.7552 | 304 | 8 |
0.0300 | 0.6929 | 309 | 10 |
0.0400 | 0.6314 | 316 | 14 |
0.0500 | 0.5357 | 321 | 17 |
0.0750 | 0.3956 | 329 | 27 |
0.1000 | 0.2546 | 334 | 38 |
peptideprophet | |
---|---|
time | 2017-02-20T13:58:40 |
author | AKeller@ISB |
est_tot_num_correct | 41914.0 |
min_prob | 0.90 |
options | DECOY=DECOY_ MINPROB=0.9 ACCMASS |
type | unlinked |
version | PeptideProphet (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
inputfile | /home/sean/Documents/proteome/20161205_Sample_3.pep.xml |
database_refresh | |
time | 2017-02-20T13:58:29 |
interact | |
time | 2017-02-20T13:57:49 |
directory | /home/sean/Documents/proteome |
filename | /home/sean/Documents/proteome/interact-20161205_Sample_3.pep.xml |
directory | /home/sean/Documents/proteome |
inputfile | 20161205_Sample_3.pep.xml |
tpp_models | |
time | Mon Feb 20 14:01:08 2017 |