| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.25 | 0.042 | 0.456 | 0.09 |
| 1 | 0.25 < nsp <= 0.86 | 0.037 | 0.174 | 0.21 |
| 2 | 0.86 < nsp <= 1.50 | 0.058 | 0.094 | 0.62 |
| 3 | 1.50 < nsp <= 2.49 | 0.074 | 0.072 | 1.03 |
| 4 | 2.49 < nsp <= 3.77 | 0.088 | 0.054 | 1.61 |
| 5 | 3.77 < nsp <= 5.60 | 0.107 | 0.047 | 2.28 |
| 6 | 5.60 < nsp <= 8.26 | 0.125 | 0.035 | 3.60 |
| 7 | 8.26 < nsp <= 13.88 | 0.143 | 0.026 | 5.42 |
| 8 | 13.88 < nsp <= 25.43 | 0.158 | 0.021 | 7.56 |
| 9 | 25.43 < nsp < inf | 0.167 | 0.021 | 8.16 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.438 | 0.000 | 1804 | 0 |
| 0.99 | 0.687 | 0.000 | 2829 | 0 |
| 0.98 | 0.855 | 0.002 | 3522 | 9 |
| 0.97 | 0.870 | 0.003 | 3584 | 10 |
| 0.96 | 0.882 | 0.003 | 3634 | 12 |
| 0.95 | 0.890 | 0.004 | 3666 | 13 |
| 0.90 | 0.919 | 0.006 | 3784 | 23 |
| 0.80 | 0.943 | 0.010 | 3885 | 40 |
| 0.70 | 0.962 | 0.016 | 3961 | 66 |
| 0.60 | 0.976 | 0.024 | 4022 | 98 |
| 0.50 | 0.993 | 0.037 | 4092 | 156 |
| 0.40 | 1.000 | 0.043 | 4119 | 186 |
| 0.30 | 1.000 | 0.043 | 4119 | 186 |
| 0.20 | 1.000 | 0.043 | 4119 | 186 |
| 0.10 | 1.000 | 0.043 | 4119 | 186 |
| 0.00 | 1.000 | 0.043 | 4119 | 186 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1804 | 0 |
| 0.0017 | 0.9892 | 3321 | 6 |
| 0.0021 | 0.9861 | 3443 | 7 |
| 0.0025 | 0.9787 | 3541 | 9 |
| 0.0030 | 0.9663 | 3608 | 11 |
| 0.0040 | 0.9414 | 3694 | 15 |
| 0.0050 | 0.9198 | 3745 | 19 |
| 0.0060 | 0.8994 | 3787 | 23 |
| 0.0071 | 0.8749 | 3819 | 27 |
| 0.0080 | 0.8529 | 3843 | 31 |
| 0.0090 | 0.8263 | 3865 | 35 |
| 0.0100 | 0.8016 | 3883 | 39 |
| 0.0150 | 0.7181 | 3948 | 60 |
| 0.0200 | 0.6473 | 3994 | 82 |
| 0.0250 | 0.5886 | 4030 | 103 |
| 0.0300 | 0.5395 | 4058 | 126 |
| 0.0401 | 0.4736 | 4106 | 171 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 19824 |
| num_input_3_spectra | 14236 |
| num_input_4_spectra | 2678 |
| num_input_5_spectra | 279 |
| num_predicted_correct_prots | 4118.6 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_3.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_3.pep.xml |
| total_no_spectrum_ids | 36676.9 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:00:59 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 5 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:01:08 2017 |