| +1 Models | |
|---|---|
| comments | using training data negative distributions |
| est_tot_correct | 0.0 |
| num_iterations | 21 |
| prior_probability | 0.000 |
| tot_num_spectra | 0 |
| Comet discrim score [fval] negmean: 1.00 | |
| pos model | gaussian (mean 2.00, stdev 0.40) |
| neg model | gaussian (mean 0.00, stdev 3.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010785 |
| pos_bandwidth | 0.010785 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| +2 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 21300.3 |
| num_iterations | 27 |
| prior_probability | 0.682 |
| tot_num_spectra | 41072 |
| Comet discrim score [fval] negmean: -2.11 | |
| pos model | gaussian (mean 2.95, stdev 2.15) |
| neg model | gaussian (mean -0.95, stdev 1.15) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.000, ntt=1 0.021, ntt=2 0.979) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.882, 1<=nmc<=2 0.118, nmc>=3 0.000) |
| neg model | (nmc=0 0.476, 1<=nmc<=2 0.522, nmc>=3 0.002) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010785 |
| pos_bandwidth | 0.010785 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.028, 0 0.849, 1 0.112, 2 0.010, 3 0.001) |
| neg model | (-3 0.000, -2 0.000, -1 0.316, 0 0.299, 1 0.163, 2 0.117, 3 0.105) |
| +3 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 16269.7 |
| num_iterations | 26 |
| prior_probability | 0.591 |
| tot_num_spectra | 38197 |
| Comet discrim score [fval] negmean: -1.63 | |
| pos model | gaussian (mean 4.14, stdev 2.53) |
| neg model | gaussian (mean -0.53, stdev 1.09) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.000, ntt=1 0.019, ntt=2 0.981) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.677, 1<=nmc<=2 0.323, nmc>=3 0.000) |
| neg model | (nmc=0 0.294, 1<=nmc<=2 0.698, nmc>=3 0.008) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010785 |
| pos_bandwidth | 0.010785 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.023, 0 0.746, 1 0.170, 2 0.053, 3 0.008) |
| neg model | (-3 0.000, -2 0.000, -1 0.235, 0 0.226, 1 0.204, 2 0.174, 3 0.161) |
| +4 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 4029.5 |
| num_iterations | 28 |
| prior_probability | 0.525 |
| tot_num_spectra | 11287 |
| Comet discrim score [fval] negmean: -2.04 | |
| pos model | gaussian (mean 1.88, stdev 1.55) |
| neg model | gaussian (mean -1.24, stdev 0.80) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.001, ntt=1 0.022, ntt=2 0.977) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.481, 1<=nmc<=2 0.519, nmc>=3 0.000) |
| neg model | (nmc=0 0.183, 1<=nmc<=2 0.801, nmc>=3 0.016) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010785 |
| pos_bandwidth | 0.010785 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.014, 0 0.770, 1 0.171, 2 0.039, 3 0.005) |
| neg model | (-3 0.000, -2 0.000, -1 0.234, 0 0.215, 1 0.204, 2 0.179, 3 0.169) |
| +5 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 603.6 |
| num_iterations | 27 |
| prior_probability | 0.332 |
| tot_num_spectra | 3040 |
| Comet discrim score [fval] negmean: -2.93 | |
| pos model | gaussian (mean 1.83, stdev 1.45) |
| neg model | gaussian (mean -1.76, stdev 1.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.000, ntt=1 0.025, ntt=2 0.975) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.375, 1<=nmc<=2 0.625, nmc>=3 0.000) |
| neg model | (nmc=0 0.146, 1<=nmc<=2 0.833, nmc>=3 0.021) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010785 |
| pos_bandwidth | 0.010785 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.008, 0 0.831, 1 0.140, 2 0.021, 3 0.001) |
| neg model | (-3 0.000, -2 0.000, -1 0.211, 0 0.182, 1 0.224, 2 0.196, 3 0.187) |
| +6 Models | |
| comments | using training data negative distributions |
| est_tot_correct | 0.0 |
| num_iterations | 21 |
| prior_probability | 0.000 |
| tot_num_spectra | 0 |
| Comet discrim score [fval] negmean: -5.00 | |
| pos model | gaussian (mean 4.56, stdev 1.24) |
| neg model | gaussian (mean 0.00, stdev 3.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010785 |
| pos_bandwidth | 0.010785 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| +7 Models | |
| comments | using training data negative distributions |
| est_tot_correct | 0.0 |
| num_iterations | 21 |
| prior_probability | 0.000 |
| tot_num_spectra | 0 |
| Comet discrim score [fval] negmean: -5.00 | |
| pos model | gaussian (mean 4.56, stdev 1.24) |
| neg model | gaussian (mean 0.00, stdev 3.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010785 |
| pos_bandwidth | 0.010785 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| MS run: /home/sean/Documents/proteome/20161205_Sample_32 | |
|---|---|
| msManufacturer | Thermo |
| msModel | Orbitrap Fusion Lumos |
| raw_data | .mzXML |
| raw_data_type | raw |
| sample_enzyme | |
| name | trypsin |
| specificity | cut: KR no_cut: P sense: C |
| search_summary | |
| base_name | /home/sean/Documents/proteome/20161205_Sample_32 |
| fragment_mass_type | monoisotopic |
| precursor_mass_type | monoisotopic |
| search_engine | Comet |
| search_engine_version | 2016.01 rev. 2 |
| search_id | 1 |
| search_database | |
| local_path | Cg-Giga_cont_AA.fa |
| type | AA |
| enzymatic_search_constraint | |
| enzyme | Trypsin |
| max_num_internal_cleavages | 2 |
| min_number_termini | 2 |
| Aminoacid and Terminal Modifications | |
| M | mass: 147.035385 massdiff: 15.994900 symbol: * variable: Y |
| C | mass: 160.030649 massdiff: 57.021464 variable: N |
| Search Parameters | |
| # comet_version | 2016.01 rev. 0 |
| activation_method | ALL |
| add_A_alanine | 0.000000 |
| add_B_user_amino_acid | 0.000000 |
| add_C_cysteine | 57.021464 |
| add_Cterm_peptide | 0.000000 |
| add_Cterm_protein | 0.000000 |
| add_D_aspartic_acid | 0.000000 |
| add_E_glutamic_acid | 0.000000 |
| add_F_phenylalanine | 0.000000 |
| add_G_glycine | 0.000000 |
| add_H_histidine | 0.000000 |
| add_I_isoleucine | 0.000000 |
| add_J_user_amino_acid | 0.000000 |
| add_K_lysine | 0.000000 |
| add_L_leucine | 0.000000 |
| add_M_methionine | 0.000000 |
| add_N_asparagine | 0.000000 |
| add_Nterm_peptide | 0.000000 |
| add_Nterm_protein | 0.000000 |
| add_O_ornithine | 0.000000 |
| add_P_proline | 0.000000 |
| add_Q_glutamine | 0.000000 |
| add_R_arginine | 0.000000 |
| add_S_serine | 0.000000 |
| add_T_threonine | 0.000000 |
| add_U_celenocysteinee | 0.000000 |
| add_V_valine | 0.000000 |
| add_W_tryptophan | 0.000000 |
| add_X_user_amino_acid | 0.000000 |
| add_Y_tyrosine | 0.000000 |
| add_Z_user_amino_acid | 0.000000 |
| allowed_missed_cleavage | 2 |
| clear_mz_range | 0.000000 0.000000 |
| clip_nterm_methionine | 0 |
| database_name | Cg-Giga_cont_AA.fa |
| decoy_prefix | DECOY_ |
| decoy_search | 1 |
| digest_mass_range | 600.000000 5000.000000 |
| fragment_bin_offset | 0.400000 |
| fragment_bin_tol | 1.000500 |
| isotope_error | 1 |
| mass_offsets | |
| mass_type_fragment | 1 |
| mass_type_parent | 1 |
| max_fragment_charge | 3 |
| max_precursor_charge | 6 |
| max_variable_mods_in_peptide | 5 |
| minimum_intensity | 0 |
| minimum_peaks | 10 |
| ms_level | 2 |
| nucleotide_reading_frame | 0 |
| num_enzyme_termini | 2 |
| num_output_lines | 5 |
| num_results | 100 |
| num_threads | 8 |
| output_outfiles | 0 |
| output_pepxmlfile | 1 |
| output_percolatorfile | 0 |
| output_sqtfile | 0 |
| output_sqtstream | 0 |
| output_suffix | |
| output_txtfile | 0 |
| override_charge | 0 |
| peptide_mass_tolerance | 20.000000 |
| peptide_mass_units | 2 |
| precursor_charge | 0 0 |
| precursor_tolerance_type | 1 |
| print_expect_score | 1 |
| remove_precursor_peak | 0 |
| remove_precursor_tolerance | 1.500000 |
| require_variable_mod | 0 |
| sample_enzyme_number | 1 |
| scan_range | 0 0 |
| search_enzyme_number | 1 |
| show_fragment_ions | 0 |
| skip_researching | 1 |
| spectrum_batch_size | 0 |
| theoretical_fragment_ions | 1 |
| use_A_ions | 0 |
| use_B_ions | 1 |
| use_C_ions | 0 |
| use_NL_ions | 0 |
| use_X_ions | 0 |
| use_Y_ions | 1 |
| use_Z_ions | 0 |
| variable_mod01 | 15.994900 M 0 3 -1 0 0 |
| variable_mod02 | 0.000000 X 0 3 -1 0 0 |
| variable_mod03 | 0.000000 X 0 3 -1 0 0 |
| variable_mod04 | 0.000000 X 0 3 -1 0 0 |
| variable_mod05 | 0.000000 X 0 3 -1 0 0 |
| variable_mod06 | 0.000000 X 0 3 -1 0 0 |
| variable_mod07 | 0.000000 X 0 3 -1 0 0 |
| variable_mod08 | 0.000000 X 0 3 -1 0 0 |
| variable_mod09 | 0.000000 X 0 3 -1 0 0 |
| Analysis Timestamps | |
| peptideprophet | 2017-02-20T13:41:13 (id: 1) |
| database_refresh | 2017-02-20T13:41:01 (id: 1) |
| database | Cg-Giga_cont_AA.fa |
| min_num_enz_term | 0 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 0.9999 | 0.5176 | 0.0000 | 21843 | 0 |
| 0.9990 | 0.6081 | 0.0001 | 25662 | 2 |
| 0.9900 | 0.7245 | 0.0007 | 30577 | 22 |
| 0.9800 | 0.7620 | 0.0014 | 32159 | 45 |
| 0.9500 | 0.8168 | 0.0036 | 34473 | 125 |
| 0.9000 | 0.8615 | 0.0074 | 36358 | 272 |
| 0.8500 | 0.8884 | 0.0114 | 37494 | 432 |
| 0.8000 | 0.9085 | 0.0157 | 38339 | 611 |
| 0.7500 | 0.9241 | 0.0202 | 39001 | 802 |
| 0.7000 | 0.9368 | 0.0248 | 39535 | 1004 |
| 0.6500 | 0.9457 | 0.0288 | 39912 | 1185 |
| 0.6000 | 0.9520 | 0.0323 | 40176 | 1342 |
| 0.5500 | 0.9581 | 0.0365 | 40433 | 1532 |
| 0.5000 | 0.9632 | 0.0407 | 40648 | 1726 |
| 0.4500 | 0.9677 | 0.0453 | 40840 | 1938 |
| 0.4000 | 0.9720 | 0.0506 | 41021 | 2185 |
| 0.3500 | 0.9759 | 0.0564 | 41186 | 2460 |
| 0.3000 | 0.9799 | 0.0636 | 41355 | 2810 |
| 0.2500 | 0.9837 | 0.0724 | 41517 | 3240 |
| 0.2000 | 0.9872 | 0.0824 | 41662 | 3740 |
| 0.1500 | 0.9903 | 0.0944 | 41792 | 4358 |
| 0.1000 | 0.9934 | 0.1125 | 41926 | 5317 |
| 0.0500 | 0.9966 | 0.1436 | 42061 | 7052 |
| 0.0000 | 1.0000 | 0.5491 | 42203 | 51393 |
| +2 only | ||||
| 0.9999 | 0.4764 | 0.0000 | 10148 | 0 |
| 0.9990 | 0.5812 | 0.0001 | 12380 | 1 |
| 0.9900 | 0.7169 | 0.0008 | 15270 | 13 |
| 0.9800 | 0.7608 | 0.0016 | 16204 | 27 |
| 0.9500 | 0.8251 | 0.0042 | 17574 | 74 |
| 0.9000 | 0.8754 | 0.0084 | 18646 | 158 |
| 0.8500 | 0.9043 | 0.0125 | 19262 | 244 |
| 0.8000 | 0.9255 | 0.0170 | 19714 | 340 |
| 0.7500 | 0.9402 | 0.0211 | 20027 | 431 |
| 0.7000 | 0.9519 | 0.0252 | 20276 | 524 |
| 0.6500 | 0.9572 | 0.0276 | 20389 | 578 |
| 0.6000 | 0.9615 | 0.0300 | 20481 | 634 |
| 0.5500 | 0.9667 | 0.0335 | 20590 | 714 |
| 0.5000 | 0.9703 | 0.0366 | 20668 | 785 |
| 0.4500 | 0.9738 | 0.0402 | 20743 | 868 |
| 0.4000 | 0.9771 | 0.0442 | 20812 | 963 |
| 0.3500 | 0.9801 | 0.0487 | 20876 | 1068 |
| 0.3000 | 0.9832 | 0.0545 | 20943 | 1207 |
| 0.2500 | 0.9858 | 0.0607 | 20999 | 1356 |
| 0.2000 | 0.9889 | 0.0698 | 21063 | 1581 |
| 0.1500 | 0.9916 | 0.0806 | 21121 | 1850 |
| 0.1000 | 0.9946 | 0.0987 | 21186 | 2319 |
| 0.0500 | 0.9973 | 0.1259 | 21244 | 3059 |
| 0.0000 | 1.0000 | 0.4814 | 21300 | 19772 |
| +3 only | ||||
| 0.9999 | 0.5813 | 0.0000 | 9458 | 0 |
| 0.9990 | 0.6534 | 0.0001 | 10630 | 1 |
| 0.9900 | 0.7431 | 0.0005 | 12090 | 7 |
| 0.9800 | 0.7721 | 0.0011 | 12562 | 13 |
| 0.9500 | 0.8160 | 0.0029 | 13276 | 38 |
| 0.9000 | 0.8523 | 0.0060 | 13867 | 84 |
| 0.8500 | 0.8762 | 0.0096 | 14255 | 139 |
| 0.8000 | 0.8947 | 0.0137 | 14557 | 202 |
| 0.7500 | 0.9117 | 0.0187 | 14833 | 283 |
| 0.7000 | 0.9248 | 0.0236 | 15047 | 363 |
| 0.6500 | 0.9371 | 0.0293 | 15246 | 460 |
| 0.6000 | 0.9445 | 0.0334 | 15366 | 531 |
| 0.5500 | 0.9513 | 0.0380 | 15477 | 612 |
| 0.5000 | 0.9577 | 0.0434 | 15581 | 706 |
| 0.4500 | 0.9632 | 0.0490 | 15672 | 807 |
| 0.4000 | 0.9682 | 0.0550 | 15753 | 917 |
| 0.3500 | 0.9730 | 0.0620 | 15831 | 1046 |
| 0.3000 | 0.9776 | 0.0702 | 15905 | 1200 |
| 0.2500 | 0.9825 | 0.0812 | 15986 | 1413 |
| 0.2000 | 0.9861 | 0.0915 | 16044 | 1615 |
| 0.1500 | 0.9894 | 0.1042 | 16098 | 1871 |
| 0.1000 | 0.9926 | 0.1215 | 16149 | 2232 |
| 0.0500 | 0.9961 | 0.1553 | 16206 | 2980 |
| 0.0000 | 1.0000 | 0.5741 | 16270 | 21927 |
| +4 only | ||||
| 0.9999 | 0.5122 | 0.0000 | 2064 | 0 |
| 0.9990 | 0.5958 | 0.0001 | 2401 | 0 |
| 0.9900 | 0.7113 | 0.0007 | 2866 | 2 |
| 0.9800 | 0.7482 | 0.0014 | 3015 | 4 |
| 0.9500 | 0.7950 | 0.0033 | 3203 | 11 |
| 0.9000 | 0.8391 | 0.0073 | 3381 | 25 |
| 0.8500 | 0.8648 | 0.0112 | 3485 | 39 |
| 0.8000 | 0.8816 | 0.0149 | 3552 | 54 |
| 0.7500 | 0.8957 | 0.0190 | 3609 | 70 |
| 0.7000 | 0.9119 | 0.0251 | 3674 | 95 |
| 0.6500 | 0.9260 | 0.0316 | 3731 | 122 |
| 0.6000 | 0.9372 | 0.0379 | 3776 | 149 |
| 0.5500 | 0.9453 | 0.0434 | 3809 | 173 |
| 0.5000 | 0.9521 | 0.0490 | 3837 | 197 |
| 0.4500 | 0.9578 | 0.0545 | 3859 | 223 |
| 0.4000 | 0.9638 | 0.0617 | 3884 | 255 |
| 0.3500 | 0.9689 | 0.0691 | 3904 | 290 |
| 0.3000 | 0.9745 | 0.0789 | 3927 | 336 |
| 0.2500 | 0.9803 | 0.0917 | 3950 | 399 |
| 0.2000 | 0.9846 | 0.1036 | 3967 | 459 |
| 0.1500 | 0.9882 | 0.1171 | 3982 | 528 |
| 0.1000 | 0.9917 | 0.1363 | 3996 | 631 |
| 0.0500 | 0.9955 | 0.1707 | 4011 | 826 |
| 0.0000 | 1.0000 | 0.6430 | 4029 | 7258 |
| +5 only | ||||
| 0.9999 | 0.2866 | 0.0000 | 173 | 0 |
| 0.9990 | 0.4158 | 0.0002 | 251 | 0 |
| 0.9900 | 0.5808 | 0.0013 | 351 | 0 |
| 0.9800 | 0.6265 | 0.0022 | 378 | 1 |
| 0.9500 | 0.6955 | 0.0052 | 420 | 2 |
| 0.9000 | 0.7677 | 0.0120 | 463 | 6 |
| 0.8500 | 0.8156 | 0.0193 | 492 | 10 |
| 0.8000 | 0.8555 | 0.0276 | 516 | 15 |
| 0.7500 | 0.8799 | 0.0343 | 531 | 19 |
| 0.7000 | 0.8919 | 0.0386 | 538 | 22 |
| 0.6500 | 0.9043 | 0.0441 | 546 | 25 |
| 0.6000 | 0.9147 | 0.0497 | 552 | 29 |
| 0.5500 | 0.9232 | 0.0555 | 557 | 33 |
| 0.5000 | 0.9319 | 0.0625 | 562 | 38 |
| 0.4500 | 0.9366 | 0.0671 | 565 | 41 |
| 0.4000 | 0.9479 | 0.0801 | 572 | 50 |
| 0.3500 | 0.9536 | 0.0878 | 576 | 55 |
| 0.3000 | 0.9622 | 0.1024 | 581 | 66 |
| 0.2500 | 0.9654 | 0.1090 | 583 | 71 |
| 0.2000 | 0.9724 | 0.1279 | 587 | 86 |
| 0.1500 | 0.9801 | 0.1549 | 592 | 108 |
| 0.1000 | 0.9861 | 0.1846 | 595 | 135 |
| 0.0500 | 0.9929 | 0.2385 | 599 | 188 |
| 0.0000 | 1.0000 | 0.8014 | 604 | 2436 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 7650 | 0 |
| 0.0001 | 0.9987 | 26145 | 3 |
| 0.0002 | 0.9973 | 27644 | 6 |
| 0.0003 | 0.9960 | 28545 | 9 |
| 0.0004 | 0.9946 | 29203 | 12 |
| 0.0005 | 0.9932 | 29724 | 15 |
| 0.0006 | 0.9918 | 30153 | 18 |
| 0.0007 | 0.9903 | 30516 | 21 |
| 0.0008 | 0.9888 | 30828 | 25 |
| 0.0009 | 0.9875 | 31107 | 28 |
| 0.0010 | 0.9859 | 31358 | 31 |
| 0.0015 | 0.9787 | 32318 | 49 |
| 0.0020 | 0.9715 | 33013 | 66 |
| 0.0025 | 0.9644 | 33557 | 84 |
| 0.0030 | 0.9577 | 34007 | 102 |
| 0.0040 | 0.9455 | 34738 | 140 |
| 0.0050 | 0.9314 | 35321 | 178 |
| 0.0060 | 0.9187 | 35797 | 216 |
| 0.0070 | 0.9056 | 36203 | 255 |
| 0.0080 | 0.8923 | 36556 | 295 |
| 0.0090 | 0.8800 | 36868 | 335 |
| 0.0100 | 0.8681 | 37149 | 375 |
| 0.0150 | 0.8065 | 38224 | 582 |
| 0.0200 | 0.7519 | 38982 | 796 |
| 0.0250 | 0.6975 | 39560 | 1015 |
| 0.0300 | 0.6371 | 40007 | 1238 |
| 0.0400 | 0.5095 | 40615 | 1693 |
| 0.0500 | 0.4068 | 41004 | 2159 |
| 0.0750 | 0.2344 | 41559 | 3371 |
| 0.1000 | 0.1316 | 41839 | 4650 |
| +2 only | |||
| 0.0000 | 1.0000 | 3879 | 0 |
| 0.0001 | 0.9989 | 12431 | 1 |
| 0.0002 | 0.9977 | 13322 | 3 |
| 0.0003 | 0.9966 | 13855 | 4 |
| 0.0004 | 0.9954 | 14240 | 6 |
| 0.0005 | 0.9942 | 14544 | 7 |
| 0.0006 | 0.9930 | 14795 | 9 |
| 0.0007 | 0.9918 | 15007 | 11 |
| 0.0008 | 0.9906 | 15193 | 12 |
| 0.0009 | 0.9892 | 15357 | 14 |
| 0.0010 | 0.9881 | 15503 | 16 |
| 0.0015 | 0.9817 | 16075 | 24 |
| 0.0020 | 0.9756 | 16486 | 33 |
| 0.0025 | 0.9695 | 16809 | 42 |
| 0.0030 | 0.9634 | 17076 | 51 |
| 0.0040 | 0.9520 | 17502 | 70 |
| 0.0050 | 0.9412 | 17846 | 90 |
| 0.0060 | 0.9287 | 18130 | 110 |
| 0.0070 | 0.9160 | 18369 | 130 |
| 0.0080 | 0.9049 | 18575 | 150 |
| 0.0090 | 0.8923 | 18757 | 171 |
| 0.0100 | 0.8810 | 18920 | 191 |
| 0.0150 | 0.8202 | 19534 | 298 |
| 0.0200 | 0.7630 | 19955 | 408 |
| 0.0250 | 0.7017 | 20266 | 520 |
| 0.0300 | 0.6000 | 20482 | 634 |
| 0.0400 | 0.4525 | 20741 | 865 |
| 0.0500 | 0.3368 | 20893 | 1100 |
| 0.0750 | 0.1754 | 21094 | 1711 |
| 0.1000 | 0.0967 | 21190 | 2356 |
| +3 only | |||
| 0.0000 | 1.0000 | 2940 | 0 |
| 0.0001 | 0.9982 | 10961 | 1 |
| 0.0002 | 0.9964 | 11406 | 2 |
| 0.0003 | 0.9945 | 11679 | 4 |
| 0.0004 | 0.9929 | 11877 | 5 |
| 0.0005 | 0.9910 | 12033 | 6 |
| 0.0006 | 0.9890 | 12159 | 7 |
| 0.0007 | 0.9872 | 12266 | 9 |
| 0.0008 | 0.9854 | 12361 | 10 |
| 0.0009 | 0.9834 | 12444 | 11 |
| 0.0010 | 0.9813 | 12517 | 13 |
| 0.0015 | 0.9722 | 12802 | 19 |
| 0.0020 | 0.9637 | 13009 | 26 |
| 0.0025 | 0.9560 | 13176 | 33 |
| 0.0030 | 0.9485 | 13315 | 40 |
| 0.0040 | 0.9314 | 13542 | 54 |
| 0.0050 | 0.9159 | 13719 | 69 |
| 0.0060 | 0.9003 | 13865 | 84 |
| 0.0070 | 0.8866 | 13990 | 99 |
| 0.0080 | 0.8729 | 14100 | 114 |
| 0.0090 | 0.8594 | 14199 | 129 |
| 0.0100 | 0.8455 | 14287 | 145 |
| 0.0150 | 0.7868 | 14637 | 223 |
| 0.0200 | 0.7355 | 14897 | 304 |
| 0.0250 | 0.6863 | 15101 | 388 |
| 0.0300 | 0.6447 | 15269 | 473 |
| 0.0400 | 0.5291 | 15519 | 647 |
| 0.0500 | 0.4412 | 15687 | 826 |
| 0.0750 | 0.2780 | 15942 | 1294 |
| 0.1000 | 0.1631 | 16082 | 1788 |
| +4 only | |||
| 0.0000 | 1.0000 | 720 | 0 |
| 0.0001 | 0.9986 | 2453 | 0 |
| 0.0002 | 0.9973 | 2592 | 1 |
| 0.0003 | 0.9958 | 2673 | 1 |
| 0.0004 | 0.9948 | 2735 | 1 |
| 0.0005 | 0.9936 | 2788 | 1 |
| 0.0006 | 0.9921 | 2829 | 2 |
| 0.0007 | 0.9904 | 2864 | 2 |
| 0.0008 | 0.9889 | 2893 | 2 |
| 0.0009 | 0.9871 | 2919 | 3 |
| 0.0010 | 0.9858 | 2942 | 3 |
| 0.0015 | 0.9788 | 3031 | 5 |
| 0.0020 | 0.9710 | 3097 | 6 |
| 0.0025 | 0.9613 | 3146 | 8 |
| 0.0030 | 0.9541 | 3185 | 10 |
| 0.0040 | 0.9405 | 3247 | 13 |
| 0.0050 | 0.9245 | 3296 | 17 |
| 0.0060 | 0.9158 | 3337 | 20 |
| 0.0070 | 0.9027 | 3374 | 24 |
| 0.0080 | 0.8904 | 3406 | 28 |
| 0.0090 | 0.8766 | 3435 | 31 |
| 0.0100 | 0.8635 | 3460 | 35 |
| 0.0150 | 0.7965 | 3556 | 54 |
| 0.0200 | 0.7439 | 3622 | 74 |
| 0.0250 | 0.7023 | 3674 | 95 |
| 0.0300 | 0.6649 | 3720 | 115 |
| 0.0400 | 0.5795 | 3790 | 159 |
| 0.0500 | 0.4915 | 3842 | 203 |
| 0.0750 | 0.3166 | 3919 | 318 |
| 0.1000 | 0.2140 | 3963 | 441 |
| +5 only | |||
| 0.0000 | 1.0000 | 117 | 0 |
| 0.0001 | 0.9994 | 227 | 0 |
| 0.0002 | 0.9989 | 259 | 0 |
| 0.0003 | 0.9980 | 280 | 0 |
| 0.0004 | 0.9973 | 294 | 0 |
| 0.0005 | 0.9963 | 305 | 0 |
| 0.0006 | 0.9958 | 315 | 0 |
| 0.0007 | 0.9946 | 323 | 0 |
| 0.0008 | 0.9937 | 329 | 0 |
| 0.0009 | 0.9934 | 335 | 0 |
| 0.0010 | 0.9927 | 341 | 0 |
| 0.0015 | 0.9871 | 361 | 1 |
| 0.0020 | 0.9819 | 374 | 1 |
| 0.0025 | 0.9785 | 385 | 1 |
| 0.0030 | 0.9725 | 394 | 1 |
| 0.0040 | 0.9648 | 407 | 2 |
| 0.0050 | 0.9542 | 419 | 2 |
| 0.0060 | 0.9459 | 427 | 3 |
| 0.0070 | 0.9347 | 436 | 3 |
| 0.0080 | 0.9285 | 442 | 4 |
| 0.0090 | 0.9232 | 448 | 4 |
| 0.0100 | 0.9178 | 454 | 5 |
| 0.0150 | 0.8821 | 478 | 7 |
| 0.0200 | 0.8479 | 496 | 10 |
| 0.0250 | 0.8183 | 511 | 13 |
| 0.0300 | 0.7795 | 523 | 17 |
| 0.0400 | 0.6827 | 541 | 23 |
| 0.0500 | 0.5961 | 553 | 30 |
| 0.0750 | 0.4272 | 570 | 47 |
| 0.1000 | 0.3109 | 580 | 66 |
| peptideprophet | |
|---|---|
| time | 2017-02-20T13:41:13 |
| author | AKeller@ISB |
| est_tot_num_correct | 42203.1 |
| min_prob | 0.90 |
| options | DECOY=DECOY_ MINPROB=0.9 ACCMASS |
| type | unlinked |
| version | PeptideProphet (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| inputfile | /home/sean/Documents/proteome/20161205_Sample_32.pep.xml |
| database_refresh | |
| time | 2017-02-20T13:41:01 |
| interact | |
| time | 2017-02-20T13:40:19 |
| directory | /home/sean/Documents/proteome |
| filename | /home/sean/Documents/proteome/interact-20161205_Sample_32.pep.xml |
| directory | /home/sean/Documents/proteome |
| inputfile | 20161205_Sample_32.pep.xml |
| tpp_models | |
| time | Mon Feb 20 13:43:41 2017 |