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Predicted Sensitivity and Error Rate

Learned NSP distributions

bin_number	nsp_range	pos_freq	neg_freq	pos/neg_ratio
Learned Number of Sibling Peptide Distributions
Neighboring bin smoothing: Y
0	0.00 < nsp <= 0.27	0.039	0.334	0.12
1	0.27 < nsp <= 0.87	0.035	0.146	0.24
2	0.87 < nsp <= 1.63	0.058	0.122	0.47
3	1.63 < nsp <= 2.64	0.074	0.143	0.51
4	2.64 < nsp <= 3.96	0.088	0.087	1.02
5	3.96 < nsp <= 5.85	0.103	0.059	1.76
6	5.85 < nsp <= 8.95	0.128	0.046	2.79
7	8.95 < nsp <= 15.02	0.148	0.029	5.11
8	15.02 < nsp <= 28.86	0.161	0.019	8.27
9	28.86 < nsp < inf	0.167	0.016	10.38

min_prob	Sensitivity	Error_Rate	num_correct	num_incorrect
Predicted Sensitivity and Error Rate
1.00	0.415	0.000	1556	0
0.99	0.800	0.001	3004	4
0.98	0.845	0.002	3170	7
0.97	0.862	0.003	3233	8
0.96	0.872	0.003	3270	10
0.95	0.881	0.003	3307	11
0.90	0.907	0.005	3403	19
0.80	0.940	0.011	3527	39
0.70	0.966	0.019	3626	71
0.60	0.983	0.028	3690	105
0.50	1.000	0.040	3753	155
0.40	1.000	0.040	3753	155
0.30	1.000	0.040	3753	155
0.20	1.000	0.040	3753	155
0.10	1.000	0.040	3753	155
0.00	1.000	0.040	3753	155

Error_Rate	min_prob	num_correct	num_incorrect
Error Table
0.0000	1.0000	1556	0
0.0001	0.9916	2535	0
0.0012	0.9915	2932	4
0.0015	0.9898	3032	5
0.0020	0.9815	3161	6
0.0025	0.9701	3233	8
0.0030	0.9580	3278	10
0.0040	0.9378	3344	13
0.0051	0.9103	3391	17
0.0060	0.8877	3421	21
0.0070	0.8733	3448	24
0.0080	0.8568	3472	28
0.0090	0.8395	3492	32
0.0100	0.8185	3510	36
0.0152	0.7571	3583	55
0.0201	0.6912	3633	74
0.0251	0.6392	3673	94
0.0300	0.5840	3703	115

protein_summary_header
initial_min_peptide_prob	0.05
min_peptide_probability	0.20
min_peptide_weight	0.50
num_input_1_spectra	0
num_input_2_spectra	18804
num_input_3_spectra	13951
num_input_4_spectra	3406
num_input_5_spectra	469
num_predicted_correct_prots	3752.5
reference_database	Cg-Giga_cont_AA.fa
residue_substitution_list	I -> L
sample_enzyme	trypsin
source_files	/home/sean/Documents/proteome/interact-20161205_Sample_32.pep.xml
source_files_alt	/home/sean/Documents/proteome/interact-20161205_Sample_32.pep.xml
total_no_spectrum_ids	36276.6
program_details
analysis	proteinprophet
time	2017-02-20T13:43:32
version	Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64))
proteinprophet_details
degen_flag	Y
final_peptide_wt_iters	5
fpkm_flag	N
groups_flag	Y
initial_peptide_wt_iters	2
nsp_distribution_iters	8
nsp_flag	Y
occam_flag	Y
tpp_models
time	Mon Feb 20 13:43:41 2017

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