+1 Models | |
---|---|
comments | using training data negative distributions |
est_tot_correct | 0.0 |
num_iterations | 21 |
prior_probability | 0.000 |
tot_num_spectra | 0 |
Comet discrim score [fval] negmean: 1.00 | |
pos model | gaussian (mean 2.00, stdev 0.40) |
neg model | gaussian (mean 0.00, stdev 3.16) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
Accurate Mass Model | |
neg_bandwidth | 0.010914 |
pos_bandwidth | 0.010914 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
+2 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 21716.1 |
num_iterations | 27 |
prior_probability | 0.669 |
tot_num_spectra | 42588 |
Comet discrim score [fval] negmean: -2.03 | |
pos model | gaussian (mean 3.02, stdev 2.11) |
neg model | gaussian (mean -0.90, stdev 1.13) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.022, ntt=2 0.978) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.871, 1<=nmc<=2 0.129, nmc>=3 0.000) |
neg model | (nmc=0 0.473, 1<=nmc<=2 0.525, nmc>=3 0.002) |
Accurate Mass Model | |
neg_bandwidth | 0.010914 |
pos_bandwidth | 0.010914 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.028, 0 0.850, 1 0.112, 2 0.010, 3 0.001) |
neg model | (-3 0.000, -2 0.000, -1 0.308, 0 0.313, 1 0.165, 2 0.111, 3 0.103) |
+3 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 16156.4 |
num_iterations | 26 |
prior_probability | 0.586 |
tot_num_spectra | 38189 |
Comet discrim score [fval] negmean: -1.60 | |
pos model | gaussian (mean 4.11, stdev 2.52) |
neg model | gaussian (mean -0.52, stdev 1.08) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.020, ntt=2 0.980) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.676, 1<=nmc<=2 0.324, nmc>=3 0.000) |
neg model | (nmc=0 0.278, 1<=nmc<=2 0.714, nmc>=3 0.008) |
Accurate Mass Model | |
neg_bandwidth | 0.010914 |
pos_bandwidth | 0.010914 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.020, 0 0.770, 1 0.156, 2 0.047, 3 0.007) |
neg model | (-3 0.000, -2 0.000, -1 0.239, 0 0.229, 1 0.201, 2 0.174, 3 0.158) |
+4 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 3908.0 |
num_iterations | 27 |
prior_probability | 0.535 |
tot_num_spectra | 10676 |
Comet discrim score [fval] negmean: -2.03 | |
pos model | gaussian (mean 1.92, stdev 1.55) |
neg model | gaussian (mean -1.23, stdev 0.80) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.020, ntt=2 0.980) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.486, 1<=nmc<=2 0.514, nmc>=3 0.000) |
neg model | (nmc=0 0.186, 1<=nmc<=2 0.797, nmc>=3 0.017) |
Accurate Mass Model | |
neg_bandwidth | 0.010914 |
pos_bandwidth | 0.010914 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.022, 0 0.789, 1 0.145, 2 0.038, 3 0.006) |
neg model | (-3 0.000, -2 0.000, -1 0.230, 0 0.224, 1 0.207, 2 0.174, 3 0.165) |
+5 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 555.5 |
num_iterations | 28 |
prior_probability | 0.357 |
tot_num_spectra | 2514 |
Comet discrim score [fval] negmean: -2.94 | |
pos model | gaussian (mean 1.95, stdev 1.45) |
neg model | gaussian (mean -1.77, stdev 1.17) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.001, ntt=1 0.020, ntt=2 0.980) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.407, 1<=nmc<=2 0.593, nmc>=3 0.000) |
neg model | (nmc=0 0.142, 1<=nmc<=2 0.830, nmc>=3 0.028) |
Accurate Mass Model | |
neg_bandwidth | 0.010914 |
pos_bandwidth | 0.010914 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.001, 0 0.856, 1 0.128, 2 0.012, 3 0.003) |
neg model | (-3 0.000, -2 0.000, -1 0.222, 0 0.182, 1 0.206, 2 0.192, 3 0.198) |
+6 Models | |
comments | using training data negative distributions |
est_tot_correct | 0.0 |
num_iterations | 21 |
prior_probability | 0.000 |
tot_num_spectra | 0 |
Comet discrim score [fval] negmean: -5.00 | |
pos model | gaussian (mean 4.56, stdev 1.24) |
neg model | gaussian (mean 0.00, stdev 3.16) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
Accurate Mass Model | |
neg_bandwidth | 0.010914 |
pos_bandwidth | 0.010914 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
+7 Models | |
comments | using training data negative distributions |
est_tot_correct | 0.0 |
num_iterations | 21 |
prior_probability | 0.000 |
tot_num_spectra | 0 |
Comet discrim score [fval] negmean: -5.00 | |
pos model | gaussian (mean 4.56, stdev 1.24) |
neg model | gaussian (mean 0.00, stdev 3.16) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
Accurate Mass Model | |
neg_bandwidth | 0.010914 |
pos_bandwidth | 0.010914 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
MS run: /home/sean/Documents/proteome/20161205_Sample_32A | |
---|---|
msManufacturer | Thermo |
msModel | Orbitrap Fusion Lumos |
raw_data | .mzXML |
raw_data_type | raw |
sample_enzyme | |
name | trypsin |
specificity | cut: KR no_cut: P sense: C |
search_summary | |
base_name | /home/sean/Documents/proteome/20161205_Sample_32A |
fragment_mass_type | monoisotopic |
precursor_mass_type | monoisotopic |
search_engine | Comet |
search_engine_version | 2016.01 rev. 2 |
search_id | 1 |
search_database | |
local_path | Cg-Giga_cont_AA.fa |
type | AA |
enzymatic_search_constraint | |
enzyme | Trypsin |
max_num_internal_cleavages | 2 |
min_number_termini | 2 |
Aminoacid and Terminal Modifications | |
M | mass: 147.035385 massdiff: 15.994900 symbol: * variable: Y |
C | mass: 160.030649 massdiff: 57.021464 variable: N |
Search Parameters | |
# comet_version | 2016.01 rev. 0 |
activation_method | ALL |
add_A_alanine | 0.000000 |
add_B_user_amino_acid | 0.000000 |
add_C_cysteine | 57.021464 |
add_Cterm_peptide | 0.000000 |
add_Cterm_protein | 0.000000 |
add_D_aspartic_acid | 0.000000 |
add_E_glutamic_acid | 0.000000 |
add_F_phenylalanine | 0.000000 |
add_G_glycine | 0.000000 |
add_H_histidine | 0.000000 |
add_I_isoleucine | 0.000000 |
add_J_user_amino_acid | 0.000000 |
add_K_lysine | 0.000000 |
add_L_leucine | 0.000000 |
add_M_methionine | 0.000000 |
add_N_asparagine | 0.000000 |
add_Nterm_peptide | 0.000000 |
add_Nterm_protein | 0.000000 |
add_O_ornithine | 0.000000 |
add_P_proline | 0.000000 |
add_Q_glutamine | 0.000000 |
add_R_arginine | 0.000000 |
add_S_serine | 0.000000 |
add_T_threonine | 0.000000 |
add_U_celenocysteinee | 0.000000 |
add_V_valine | 0.000000 |
add_W_tryptophan | 0.000000 |
add_X_user_amino_acid | 0.000000 |
add_Y_tyrosine | 0.000000 |
add_Z_user_amino_acid | 0.000000 |
allowed_missed_cleavage | 2 |
clear_mz_range | 0.000000 0.000000 |
clip_nterm_methionine | 0 |
database_name | Cg-Giga_cont_AA.fa |
decoy_prefix | DECOY_ |
decoy_search | 1 |
digest_mass_range | 600.000000 5000.000000 |
fragment_bin_offset | 0.400000 |
fragment_bin_tol | 1.000500 |
isotope_error | 1 |
mass_offsets | |
mass_type_fragment | 1 |
mass_type_parent | 1 |
max_fragment_charge | 3 |
max_precursor_charge | 6 |
max_variable_mods_in_peptide | 5 |
minimum_intensity | 0 |
minimum_peaks | 10 |
ms_level | 2 |
nucleotide_reading_frame | 0 |
num_enzyme_termini | 2 |
num_output_lines | 5 |
num_results | 100 |
num_threads | 8 |
output_outfiles | 0 |
output_pepxmlfile | 1 |
output_percolatorfile | 0 |
output_sqtfile | 0 |
output_sqtstream | 0 |
output_suffix | |
output_txtfile | 0 |
override_charge | 0 |
peptide_mass_tolerance | 20.000000 |
peptide_mass_units | 2 |
precursor_charge | 0 0 |
precursor_tolerance_type | 1 |
print_expect_score | 1 |
remove_precursor_peak | 0 |
remove_precursor_tolerance | 1.500000 |
require_variable_mod | 0 |
sample_enzyme_number | 1 |
scan_range | 0 0 |
search_enzyme_number | 1 |
show_fragment_ions | 0 |
skip_researching | 1 |
spectrum_batch_size | 0 |
theoretical_fragment_ions | 1 |
use_A_ions | 0 |
use_B_ions | 1 |
use_C_ions | 0 |
use_NL_ions | 0 |
use_X_ions | 0 |
use_Y_ions | 1 |
use_Z_ions | 0 |
variable_mod01 | 15.994900 M 0 3 -1 0 0 |
variable_mod02 | 0.000000 X 0 3 -1 0 0 |
variable_mod03 | 0.000000 X 0 3 -1 0 0 |
variable_mod04 | 0.000000 X 0 3 -1 0 0 |
variable_mod05 | 0.000000 X 0 3 -1 0 0 |
variable_mod06 | 0.000000 X 0 3 -1 0 0 |
variable_mod07 | 0.000000 X 0 3 -1 0 0 |
variable_mod08 | 0.000000 X 0 3 -1 0 0 |
variable_mod09 | 0.000000 X 0 3 -1 0 0 |
Analysis Timestamps | |
peptideprophet | 2017-02-20T13:37:49 (id: 1) |
database_refresh | 2017-02-20T13:37:37 (id: 1) |
database | Cg-Giga_cont_AA.fa |
min_num_enz_term | 0 |
Predicted Sensitivity and Error Rate | ||||
min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
---|---|---|---|---|
0.9999 | 0.5220 | 0.0000 | 22098 | 0 |
0.9990 | 0.6114 | 0.0001 | 25883 | 2 |
0.9900 | 0.7230 | 0.0007 | 30609 | 21 |
0.9800 | 0.7577 | 0.0013 | 32076 | 43 |
0.9500 | 0.8107 | 0.0035 | 34322 | 120 |
0.9000 | 0.8545 | 0.0073 | 36176 | 268 |
0.8500 | 0.8823 | 0.0115 | 37354 | 435 |
0.8000 | 0.9028 | 0.0159 | 38220 | 618 |
0.7500 | 0.9187 | 0.0205 | 38894 | 812 |
0.7000 | 0.9314 | 0.0251 | 39430 | 1016 |
0.6500 | 0.9425 | 0.0302 | 39902 | 1243 |
0.6000 | 0.9499 | 0.0344 | 40215 | 1432 |
0.5500 | 0.9563 | 0.0387 | 40486 | 1632 |
0.5000 | 0.9618 | 0.0433 | 40719 | 1842 |
0.4500 | 0.9669 | 0.0484 | 40934 | 2080 |
0.4000 | 0.9719 | 0.0545 | 41148 | 2371 |
0.3500 | 0.9766 | 0.0613 | 41345 | 2700 |
0.3000 | 0.9805 | 0.0683 | 41509 | 3041 |
0.2500 | 0.9846 | 0.0776 | 41684 | 3507 |
0.2000 | 0.9877 | 0.0864 | 41814 | 3955 |
0.1500 | 0.9906 | 0.0977 | 41936 | 4539 |
0.1000 | 0.9936 | 0.1150 | 42066 | 5465 |
0.0500 | 0.9969 | 0.1461 | 42203 | 7222 |
0.0000 | 1.0000 | 0.5495 | 42336 | 51631 |
+2 only | ||||
0.9999 | 0.4831 | 0.0000 | 10492 | 0 |
0.9990 | 0.5858 | 0.0001 | 12721 | 1 |
0.9900 | 0.7151 | 0.0008 | 15530 | 12 |
0.9800 | 0.7552 | 0.0015 | 16400 | 25 |
0.9500 | 0.8146 | 0.0039 | 17690 | 70 |
0.9000 | 0.8626 | 0.0080 | 18732 | 152 |
0.8500 | 0.8932 | 0.0126 | 19396 | 247 |
0.8000 | 0.9143 | 0.0170 | 19855 | 343 |
0.7500 | 0.9302 | 0.0214 | 20199 | 443 |
0.7000 | 0.9428 | 0.0260 | 20474 | 547 |
0.6500 | 0.9525 | 0.0304 | 20685 | 648 |
0.6000 | 0.9596 | 0.0343 | 20838 | 740 |
0.5500 | 0.9648 | 0.0378 | 20951 | 823 |
0.5000 | 0.9691 | 0.0414 | 21045 | 909 |
0.4500 | 0.9732 | 0.0455 | 21135 | 1008 |
0.4000 | 0.9775 | 0.0507 | 21228 | 1134 |
0.3500 | 0.9810 | 0.0559 | 21304 | 1261 |
0.3000 | 0.9841 | 0.0615 | 21371 | 1401 |
0.2500 | 0.9869 | 0.0679 | 21431 | 1561 |
0.2000 | 0.9896 | 0.0760 | 21490 | 1768 |
0.1500 | 0.9921 | 0.0857 | 21544 | 2020 |
0.1000 | 0.9947 | 0.1011 | 21600 | 2429 |
0.0500 | 0.9975 | 0.1287 | 21661 | 3199 |
0.0000 | 1.0000 | 0.4901 | 21716 | 20872 |
+3 only | ||||
0.9999 | 0.5811 | 0.0000 | 9389 | 0 |
0.9990 | 0.6530 | 0.0001 | 10549 | 1 |
0.9900 | 0.7375 | 0.0005 | 11915 | 6 |
0.9800 | 0.7655 | 0.0010 | 12367 | 13 |
0.9500 | 0.8110 | 0.0029 | 13102 | 39 |
0.9000 | 0.8489 | 0.0064 | 13715 | 88 |
0.8500 | 0.8734 | 0.0101 | 14111 | 144 |
0.8000 | 0.8929 | 0.0144 | 14426 | 211 |
0.7500 | 0.9099 | 0.0193 | 14700 | 290 |
0.7000 | 0.9227 | 0.0241 | 14908 | 368 |
0.6500 | 0.9354 | 0.0300 | 15113 | 468 |
0.6000 | 0.9421 | 0.0338 | 15221 | 532 |
0.5500 | 0.9495 | 0.0389 | 15341 | 621 |
0.5000 | 0.9557 | 0.0440 | 15441 | 711 |
0.4500 | 0.9620 | 0.0503 | 15542 | 824 |
0.4000 | 0.9676 | 0.0571 | 15633 | 948 |
0.3500 | 0.9733 | 0.0653 | 15725 | 1099 |
0.3000 | 0.9777 | 0.0733 | 15796 | 1250 |
0.2500 | 0.9830 | 0.0849 | 15881 | 1473 |
0.2000 | 0.9863 | 0.0943 | 15934 | 1659 |
0.1500 | 0.9895 | 0.1066 | 15987 | 1907 |
0.1000 | 0.9929 | 0.1255 | 16042 | 2302 |
0.0500 | 0.9964 | 0.1578 | 16098 | 3015 |
0.0000 | 1.0000 | 0.5769 | 16156 | 22033 |
+4 only | ||||
0.9999 | 0.5246 | 0.0000 | 2050 | 0 |
0.9990 | 0.6028 | 0.0001 | 2356 | 0 |
0.9900 | 0.7193 | 0.0007 | 2811 | 2 |
0.9800 | 0.7505 | 0.0013 | 2933 | 4 |
0.9500 | 0.7964 | 0.0032 | 3112 | 10 |
0.9000 | 0.8383 | 0.0069 | 3276 | 23 |
0.8500 | 0.8625 | 0.0106 | 3371 | 36 |
0.8000 | 0.8838 | 0.0154 | 3454 | 54 |
0.7500 | 0.8966 | 0.0191 | 3504 | 68 |
0.7000 | 0.9084 | 0.0236 | 3550 | 86 |
0.6500 | 0.9205 | 0.0293 | 3597 | 109 |
0.6000 | 0.9323 | 0.0361 | 3644 | 136 |
0.5500 | 0.9412 | 0.0422 | 3678 | 162 |
0.5000 | 0.9501 | 0.0494 | 3713 | 193 |
0.4500 | 0.9555 | 0.0547 | 3734 | 216 |
0.4000 | 0.9617 | 0.0623 | 3758 | 250 |
0.3500 | 0.9686 | 0.0722 | 3785 | 295 |
0.3000 | 0.9736 | 0.0810 | 3805 | 335 |
0.2500 | 0.9804 | 0.0957 | 3831 | 406 |
0.2000 | 0.9838 | 0.1052 | 3845 | 452 |
0.1500 | 0.9875 | 0.1189 | 3859 | 521 |
0.1000 | 0.9913 | 0.1391 | 3874 | 626 |
0.0500 | 0.9959 | 0.1803 | 3892 | 856 |
0.0000 | 1.0000 | 0.6339 | 3908 | 6768 |
+5 only | ||||
0.9999 | 0.3006 | 0.0000 | 167 | 0 |
0.9990 | 0.4626 | 0.0002 | 257 | 0 |
0.9900 | 0.6364 | 0.0013 | 354 | 0 |
0.9800 | 0.6773 | 0.0021 | 376 | 1 |
0.9500 | 0.7504 | 0.0051 | 417 | 2 |
0.9000 | 0.8156 | 0.0108 | 453 | 5 |
0.8500 | 0.8565 | 0.0169 | 476 | 8 |
0.8000 | 0.8727 | 0.0206 | 485 | 10 |
0.7500 | 0.8824 | 0.0235 | 490 | 12 |
0.7000 | 0.8967 | 0.0290 | 498 | 15 |
0.6500 | 0.9112 | 0.0358 | 506 | 19 |
0.6000 | 0.9234 | 0.0430 | 513 | 23 |
0.5500 | 0.9296 | 0.0472 | 516 | 26 |
0.5000 | 0.9362 | 0.0527 | 520 | 29 |
0.4500 | 0.9413 | 0.0578 | 523 | 32 |
0.4000 | 0.9513 | 0.0696 | 528 | 40 |
0.3500 | 0.9568 | 0.0773 | 531 | 45 |
0.3000 | 0.9661 | 0.0935 | 537 | 55 |
0.2500 | 0.9739 | 0.1102 | 541 | 67 |
0.2000 | 0.9792 | 0.1241 | 544 | 77 |
0.1500 | 0.9842 | 0.1418 | 547 | 90 |
0.1000 | 0.9890 | 0.1651 | 549 | 109 |
0.0500 | 0.9948 | 0.2150 | 553 | 151 |
0.0000 | 1.0000 | 0.7790 | 556 | 1958 |
Error Table | |||
Error_Rate | min_prob | num_correct | num_incorrect |
---|---|---|---|
0.0000 | 1.0000 | 7577 | 0 |
0.0001 | 0.9986 | 26389 | 3 |
0.0002 | 0.9972 | 27868 | 6 |
0.0003 | 0.9958 | 28751 | 9 |
0.0004 | 0.9943 | 29392 | 12 |
0.0005 | 0.9929 | 29890 | 15 |
0.0006 | 0.9913 | 30299 | 18 |
0.0007 | 0.9898 | 30643 | 21 |
0.0008 | 0.9882 | 30939 | 25 |
0.0009 | 0.9867 | 31202 | 28 |
0.0010 | 0.9851 | 31437 | 31 |
0.0015 | 0.9773 | 32342 | 49 |
0.0020 | 0.9700 | 32997 | 66 |
0.0025 | 0.9632 | 33515 | 84 |
0.0030 | 0.9563 | 33950 | 102 |
0.0040 | 0.9426 | 34654 | 139 |
0.0050 | 0.9289 | 35205 | 177 |
0.0060 | 0.9157 | 35663 | 215 |
0.0070 | 0.9037 | 36054 | 254 |
0.0080 | 0.8919 | 36401 | 294 |
0.0090 | 0.8776 | 36708 | 334 |
0.0100 | 0.8662 | 36981 | 374 |
0.0150 | 0.8093 | 38062 | 580 |
0.0200 | 0.7548 | 38834 | 793 |
0.0250 | 0.7008 | 39419 | 1011 |
0.0300 | 0.6525 | 39885 | 1234 |
0.0400 | 0.5363 | 40556 | 1691 |
0.0500 | 0.4335 | 40997 | 2158 |
0.0750 | 0.2631 | 41640 | 3377 |
0.1000 | 0.1409 | 41957 | 4663 |
+2 only | |||
0.0000 | 1.0000 | 3890 | 0 |
0.0001 | 0.9989 | 12797 | 1 |
0.0002 | 0.9977 | 13682 | 3 |
0.0003 | 0.9965 | 14213 | 4 |
0.0004 | 0.9953 | 14593 | 6 |
0.0005 | 0.9940 | 14894 | 7 |
0.0006 | 0.9927 | 15138 | 9 |
0.0007 | 0.9914 | 15345 | 11 |
0.0008 | 0.9900 | 15524 | 12 |
0.0009 | 0.9887 | 15682 | 14 |
0.0010 | 0.9875 | 15825 | 16 |
0.0015 | 0.9804 | 16369 | 25 |
0.0020 | 0.9737 | 16752 | 34 |
0.0025 | 0.9676 | 17057 | 43 |
0.0030 | 0.9611 | 17311 | 52 |
0.0040 | 0.9490 | 17717 | 71 |
0.0050 | 0.9361 | 18037 | 91 |
0.0060 | 0.9241 | 18302 | 111 |
0.0070 | 0.9117 | 18527 | 131 |
0.0080 | 0.9005 | 18725 | 151 |
0.0090 | 0.8887 | 18900 | 172 |
0.0100 | 0.8756 | 19056 | 193 |
0.0150 | 0.8220 | 19667 | 300 |
0.0200 | 0.7672 | 20099 | 410 |
0.0250 | 0.7101 | 20420 | 524 |
0.0300 | 0.6551 | 20670 | 640 |
0.0400 | 0.5169 | 21011 | 876 |
0.0500 | 0.4059 | 21216 | 1118 |
0.0750 | 0.2070 | 21484 | 1743 |
0.1000 | 0.1033 | 21597 | 2401 |
+3 only | |||
0.0000 | 1.0000 | 2885 | 0 |
0.0001 | 0.9981 | 10883 | 1 |
0.0002 | 0.9963 | 11314 | 2 |
0.0003 | 0.9942 | 11574 | 3 |
0.0004 | 0.9922 | 11757 | 5 |
0.0005 | 0.9902 | 11899 | 6 |
0.0006 | 0.9878 | 12013 | 7 |
0.0007 | 0.9862 | 12109 | 9 |
0.0008 | 0.9843 | 12194 | 10 |
0.0009 | 0.9825 | 12271 | 11 |
0.0010 | 0.9809 | 12341 | 12 |
0.0015 | 0.9717 | 12614 | 19 |
0.0020 | 0.9634 | 12813 | 26 |
0.0025 | 0.9564 | 12978 | 33 |
0.0030 | 0.9488 | 13119 | 40 |
0.0040 | 0.9319 | 13342 | 54 |
0.0050 | 0.9166 | 13518 | 68 |
0.0060 | 0.9040 | 13665 | 83 |
0.0070 | 0.8925 | 13797 | 97 |
0.0080 | 0.8763 | 13911 | 112 |
0.0090 | 0.8631 | 14011 | 127 |
0.0100 | 0.8509 | 14102 | 143 |
0.0150 | 0.7938 | 14465 | 221 |
0.0200 | 0.7435 | 14733 | 301 |
0.0250 | 0.6921 | 14942 | 383 |
0.0300 | 0.6502 | 15114 | 468 |
0.0400 | 0.5405 | 15365 | 641 |
0.0500 | 0.4522 | 15538 | 819 |
0.0750 | 0.2921 | 15810 | 1283 |
0.1000 | 0.1741 | 15961 | 1775 |
+4 only | |||
0.0000 | 1.0000 | 709 | 0 |
0.0001 | 0.9986 | 2417 | 0 |
0.0002 | 0.9970 | 2548 | 1 |
0.0003 | 0.9958 | 2625 | 1 |
0.0004 | 0.9945 | 2684 | 1 |
0.0005 | 0.9932 | 2732 | 1 |
0.0006 | 0.9916 | 2770 | 2 |
0.0007 | 0.9902 | 2803 | 2 |
0.0008 | 0.9884 | 2832 | 2 |
0.0009 | 0.9865 | 2856 | 3 |
0.0010 | 0.9849 | 2878 | 3 |
0.0015 | 0.9775 | 2961 | 4 |
0.0020 | 0.9700 | 3020 | 6 |
0.0025 | 0.9620 | 3067 | 8 |
0.0030 | 0.9524 | 3104 | 9 |
0.0040 | 0.9379 | 3162 | 13 |
0.0050 | 0.9232 | 3209 | 16 |
0.0060 | 0.9112 | 3247 | 20 |
0.0070 | 0.8982 | 3281 | 23 |
0.0080 | 0.8824 | 3310 | 27 |
0.0090 | 0.8712 | 3336 | 30 |
0.0100 | 0.8581 | 3359 | 34 |
0.0150 | 0.8035 | 3449 | 53 |
0.0200 | 0.7370 | 3515 | 72 |
0.0250 | 0.6871 | 3564 | 92 |
0.0300 | 0.6447 | 3603 | 112 |
0.0400 | 0.5693 | 3668 | 153 |
0.0500 | 0.4895 | 3717 | 196 |
0.0750 | 0.3331 | 3792 | 309 |
0.1000 | 0.2249 | 3838 | 428 |
+5 only | |||
0.0000 | 1.0000 | 99 | 0 |
0.0001 | 0.9995 | 230 | 0 |
0.0002 | 0.9988 | 265 | 0 |
0.0003 | 0.9977 | 284 | 0 |
0.0004 | 0.9971 | 297 | 0 |
0.0005 | 0.9965 | 308 | 0 |
0.0006 | 0.9953 | 317 | 0 |
0.0007 | 0.9947 | 324 | 0 |
0.0008 | 0.9939 | 331 | 0 |
0.0009 | 0.9928 | 337 | 0 |
0.0010 | 0.9921 | 342 | 0 |
0.0015 | 0.9879 | 362 | 1 |
0.0020 | 0.9807 | 376 | 1 |
0.0025 | 0.9762 | 386 | 1 |
0.0030 | 0.9698 | 394 | 1 |
0.0040 | 0.9638 | 407 | 2 |
0.0050 | 0.9505 | 417 | 2 |
0.0060 | 0.9424 | 425 | 3 |
0.0070 | 0.9351 | 433 | 3 |
0.0080 | 0.9262 | 439 | 4 |
0.0090 | 0.9190 | 446 | 4 |
0.0100 | 0.9057 | 451 | 5 |
0.0150 | 0.8633 | 471 | 7 |
0.0200 | 0.8041 | 485 | 10 |
0.0250 | 0.7291 | 494 | 13 |
0.0300 | 0.6915 | 500 | 16 |
0.0400 | 0.6128 | 511 | 22 |
0.0500 | 0.5256 | 519 | 28 |
0.0750 | 0.3627 | 531 | 44 |
0.1000 | 0.2784 | 539 | 61 |
peptideprophet | |
---|---|
time | 2017-02-20T13:37:49 |
author | AKeller@ISB |
est_tot_num_correct | 42336.0 |
min_prob | 0.90 |
options | DECOY=DECOY_ MINPROB=0.9 ACCMASS |
type | unlinked |
version | PeptideProphet (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
inputfile | /home/sean/Documents/proteome/20161205_Sample_32A.pep.xml |
database_refresh | |
time | 2017-02-20T13:37:37 |
interact | |
time | 2017-02-20T13:36:54 |
directory | /home/sean/Documents/proteome |
filename | /home/sean/Documents/proteome/interact-20161205_Sample_32A.pep.xml |
directory | /home/sean/Documents/proteome |
inputfile | 20161205_Sample_32A.pep.xml |
tpp_models | |
time | Mon Feb 20 13:40:19 2017 |