| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.29 | 0.038 | 0.450 | 0.09 |
| 1 | 0.29 < nsp <= 0.87 | 0.035 | 0.174 | 0.20 |
| 2 | 0.87 < nsp <= 1.67 | 0.059 | 0.083 | 0.71 |
| 3 | 1.67 < nsp <= 2.70 | 0.074 | 0.064 | 1.15 |
| 4 | 2.70 < nsp <= 3.94 | 0.088 | 0.057 | 1.53 |
| 5 | 3.94 < nsp <= 5.83 | 0.102 | 0.052 | 1.98 |
| 6 | 5.83 < nsp <= 8.88 | 0.128 | 0.051 | 2.50 |
| 7 | 8.88 < nsp <= 14.97 | 0.148 | 0.033 | 4.44 |
| 8 | 14.97 < nsp <= 28.78 | 0.157 | 0.019 | 8.05 |
| 9 | 28.78 < nsp < inf | 0.171 | 0.016 | 10.75 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.444 | 0.000 | 1649 | 0 |
| 0.99 | 0.692 | 0.000 | 2573 | 0 |
| 0.98 | 0.849 | 0.002 | 3154 | 8 |
| 0.97 | 0.869 | 0.003 | 3231 | 10 |
| 0.96 | 0.879 | 0.003 | 3268 | 11 |
| 0.95 | 0.887 | 0.004 | 3296 | 12 |
| 0.90 | 0.909 | 0.005 | 3380 | 19 |
| 0.80 | 0.936 | 0.010 | 3477 | 36 |
| 0.70 | 0.957 | 0.017 | 3555 | 62 |
| 0.60 | 0.971 | 0.025 | 3610 | 92 |
| 0.50 | 0.989 | 0.038 | 3676 | 145 |
| 0.40 | 1.000 | 0.049 | 3717 | 192 |
| 0.30 | 1.000 | 0.049 | 3717 | 192 |
| 0.20 | 1.000 | 0.049 | 3717 | 192 |
| 0.10 | 1.000 | 0.049 | 3717 | 192 |
| 0.00 | 1.000 | 0.049 | 3717 | 192 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1649 | 0 |
| 0.0016 | 0.9884 | 2949 | 5 |
| 0.0021 | 0.9849 | 3089 | 7 |
| 0.0025 | 0.9793 | 3167 | 8 |
| 0.0030 | 0.9692 | 3234 | 10 |
| 0.0040 | 0.9443 | 3314 | 13 |
| 0.0050 | 0.9185 | 3365 | 17 |
| 0.0060 | 0.8864 | 3396 | 21 |
| 0.0070 | 0.8624 | 3422 | 24 |
| 0.0080 | 0.8380 | 3442 | 28 |
| 0.0090 | 0.8204 | 3460 | 31 |
| 0.0101 | 0.8011 | 3476 | 35 |
| 0.0150 | 0.7283 | 3536 | 54 |
| 0.0202 | 0.6530 | 3580 | 74 |
| 0.0251 | 0.5968 | 3612 | 93 |
| 0.0300 | 0.5563 | 3639 | 113 |
| 0.0401 | 0.4858 | 3684 | 154 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 18882 |
| num_input_3_spectra | 13803 |
| num_input_4_spectra | 3299 |
| num_input_5_spectra | 458 |
| num_predicted_correct_prots | 3716.9 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_32A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_32A.pep.xml |
| total_no_spectrum_ids | 36089.3 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T13:40:10 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 13:40:19 2017 |