| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.07 | 0.077 | 0.494 | 0.16 |
| 1 | 0.07 < nsp <= 0.34 | 0.032 | 0.137 | 0.24 |
| 2 | 0.34 < nsp <= 0.71 | 0.041 | 0.043 | 0.95 |
| 3 | 0.71 < nsp <= 1.00 | 0.073 | 0.062 | 1.19 |
| 4 | 1.00 < nsp <= 1.70 | 0.074 | 0.049 | 1.52 |
| 5 | 1.70 < nsp <= 2.38 | 0.092 | 0.045 | 2.06 |
| 6 | 2.38 < nsp <= 3.62 | 0.115 | 0.056 | 2.05 (2.06) |
| 7 | 3.62 < nsp <= 6.03 | 0.154 | 0.057 | 2.71 |
| 8 | 6.03 < nsp <= 16.14 | 0.177 | 0.034 | 5.20 |
| 9 | 16.14 < nsp < inf | 0.164 | 0.024 | 6.88 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.343 | 0.000 | 761 | 0 |
| 0.99 | 0.772 | 0.002 | 1715 | 3 |
| 0.98 | 0.816 | 0.003 | 1810 | 5 |
| 0.97 | 0.836 | 0.003 | 1856 | 6 |
| 0.96 | 0.847 | 0.003 | 1881 | 7 |
| 0.95 | 0.860 | 0.004 | 1908 | 8 |
| 0.90 | 0.897 | 0.007 | 1991 | 14 |
| 0.80 | 0.942 | 0.015 | 2090 | 32 |
| 0.70 | 0.967 | 0.023 | 2147 | 51 |
| 0.60 | 0.995 | 0.037 | 2210 | 84 |
| 0.50 | 1.000 | 0.039 | 2220 | 91 |
| 0.40 | 1.000 | 0.039 | 2220 | 91 |
| 0.30 | 1.000 | 0.039 | 2220 | 91 |
| 0.20 | 1.000 | 0.039 | 2220 | 91 |
| 0.10 | 1.000 | 0.039 | 2220 | 91 |
| 0.00 | 1.000 | 0.039 | 2220 | 91 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 761 | 0 |
| 0.0014 | 0.9936 | 1585 | 2 |
| 0.0016 | 0.9930 | 1637 | 3 |
| 0.0020 | 0.9886 | 1746 | 4 |
| 0.0025 | 0.9805 | 1810 | 5 |
| 0.0030 | 0.9707 | 1855 | 6 |
| 0.0040 | 0.9533 | 1905 | 8 |
| 0.0050 | 0.9353 | 1939 | 10 |
| 0.0060 | 0.9173 | 1966 | 12 |
| 0.0070 | 0.9041 | 1988 | 14 |
| 0.0080 | 0.8850 | 2007 | 16 |
| 0.0090 | 0.8711 | 2023 | 18 |
| 0.0101 | 0.8590 | 2037 | 21 |
| 0.0150 | 0.7956 | 2092 | 32 |
| 0.0200 | 0.7317 | 2129 | 44 |
| 0.0252 | 0.6893 | 2159 | 56 |
| 0.0303 | 0.6463 | 2184 | 68 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 7521 |
| num_input_3_spectra | 3861 |
| num_input_4_spectra | 659 |
| num_input_5_spectra | 44 |
| num_predicted_correct_prots | 2220.0 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_35.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_35.pep.xml |
| total_no_spectrum_ids | 11939.1 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T13:47:59 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 3 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 10 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 13:48:02 2017 |