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Predicted Sensitivity and Error Rate

Learned NSP distributions

bin_number	nsp_range	pos_freq	neg_freq	pos/neg_ratio
Learned Number of Sibling Peptide Distributions
Neighboring bin smoothing: Y
0	0.00 < nsp <= 0.06	0.073	0.497	0.15
1	0.06 < nsp <= 0.33	0.030	0.137	0.22
2	0.33 < nsp <= 0.66	0.039	0.034	1.13
3	0.66 < nsp <= 1.00	0.072	0.033	2.18
4	1.00 < nsp <= 1.58	0.075	0.038	1.98 (2.18)
5	1.58 < nsp <= 2.38	0.091	0.053	1.71 (2.18)
6	2.38 < nsp <= 3.58	0.121	0.068	1.78 (2.18)
7	3.58 < nsp <= 6.20	0.155	0.071	2.17 (2.18)
8	6.20 < nsp <= 15.08	0.180	0.041	4.36
9	15.08 < nsp < inf	0.164	0.027	6.11

min_prob	Sensitivity	Error_Rate	num_correct	num_incorrect
Predicted Sensitivity and Error Rate
1.00	0.365	0.000	770	0
0.99	0.776	0.002	1640	3
0.98	0.816	0.002	1724	4
0.97	0.836	0.003	1765	5
0.96	0.849	0.003	1793	6
0.95	0.857	0.004	1811	7
0.90	0.891	0.007	1882	13
0.80	0.928	0.013	1960	26
0.70	0.960	0.023	2028	48
0.60	0.991	0.038	2094	83
0.50	1.000	0.044	2112	97
0.40	1.000	0.044	2112	97
0.30	1.000	0.044	2112	97
0.20	1.000	0.044	2112	97
0.10	1.000	0.044	2112	97
0.00	1.000	0.044	2112	97

Error_Rate	min_prob	num_correct	num_incorrect
Error Table
0.0000	1.0000	770	0
0.0013	0.9933	1523	2
0.0015	0.9926	1576	2
0.0020	0.9866	1675	3
0.0025	0.9788	1732	4
0.0030	0.9678	1769	5
0.0040	0.9477	1815	7
0.0051	0.9331	1847	9
0.0061	0.9130	1871	11
0.0070	0.8959	1889	13
0.0081	0.8799	1906	15
0.0090	0.8617	1919	17
0.0101	0.8462	1931	20
0.0150	0.7785	1977	30
0.0201	0.7300	2011	41
0.0250	0.6872	2038	52
0.0301	0.6507	2061	64
0.0400	0.5867	2099	88

protein_summary_header
initial_min_peptide_prob	0.05
min_peptide_probability	0.20
min_peptide_weight	0.50
num_input_1_spectra	0
num_input_2_spectra	7335
num_input_3_spectra	3774
num_input_4_spectra	622
num_input_5_spectra	44
num_predicted_correct_prots	2112.2
reference_database	Cg-Giga_cont_AA.fa
residue_substitution_list	I -> L
sample_enzyme	trypsin
source_files	/home/sean/Documents/proteome/interact-20161205_Sample_35A.pep.xml
source_files_alt	/home/sean/Documents/proteome/interact-20161205_Sample_35A.pep.xml
total_no_spectrum_ids	11622.8
program_details
analysis	proteinprophet
time	2017-02-20T13:45:48
version	Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64))
proteinprophet_details
degen_flag	Y
final_peptide_wt_iters	4
fpkm_flag	N
groups_flag	Y
initial_peptide_wt_iters	2
nsp_distribution_iters	9
nsp_flag	Y
occam_flag	Y
tpp_models
time	Mon Feb 20 13:45:52 2017

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