| +1 Models | |
|---|---|
| comments | using training data negative distributions |
| est_tot_correct | 0.0 |
| num_iterations | 21 |
| prior_probability | 0.000 |
| tot_num_spectra | 0 |
| Comet discrim score [fval] negmean: 1.00 | |
| pos model | gaussian (mean 2.00, stdev 0.40) |
| neg model | gaussian (mean 0.00, stdev 3.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010872 |
| pos_bandwidth | 0.010872 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| +2 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 21128.1 |
| num_iterations | 27 |
| prior_probability | 0.673 |
| tot_num_spectra | 41369 |
| Comet discrim score [fval] negmean: -2.10 | |
| pos model | gaussian (mean 2.88, stdev 2.14) |
| neg model | gaussian (mean -0.97, stdev 1.13) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.000, ntt=1 0.021, ntt=2 0.978) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.892, 1<=nmc<=2 0.108, nmc>=3 0.000) |
| neg model | (nmc=0 0.486, 1<=nmc<=2 0.512, nmc>=3 0.002) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010872 |
| pos_bandwidth | 0.010872 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.030, 0 0.845, 1 0.115, 2 0.010, 3 0.001) |
| neg model | (-3 0.000, -2 0.000, -1 0.311, 0 0.304, 1 0.164, 2 0.120, 3 0.102) |
| +3 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 16090.6 |
| num_iterations | 27 |
| prior_probability | 0.586 |
| tot_num_spectra | 38063 |
| Comet discrim score [fval] negmean: -1.63 | |
| pos model | gaussian (mean 4.03, stdev 2.49) |
| neg model | gaussian (mean -0.53, stdev 1.10) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.000, ntt=1 0.018, ntt=2 0.982) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.684, 1<=nmc<=2 0.316, nmc>=3 0.000) |
| neg model | (nmc=0 0.297, 1<=nmc<=2 0.695, nmc>=3 0.008) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010872 |
| pos_bandwidth | 0.010872 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.022, 0 0.744, 1 0.173, 2 0.052, 3 0.009) |
| neg model | (-3 0.000, -2 0.000, -1 0.241, 0 0.229, 1 0.199, 2 0.176, 3 0.154) |
| +4 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 4069.1 |
| num_iterations | 26 |
| prior_probability | 0.512 |
| tot_num_spectra | 11529 |
| Comet discrim score [fval] negmean: -2.00 | |
| pos model | gaussian (mean 1.84, stdev 1.50) |
| neg model | gaussian (mean -1.20, stdev 0.80) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.000, ntt=1 0.023, ntt=2 0.977) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.498, 1<=nmc<=2 0.502, nmc>=3 0.000) |
| neg model | (nmc=0 0.190, 1<=nmc<=2 0.795, nmc>=3 0.014) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010872 |
| pos_bandwidth | 0.010872 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.021, 0 0.751, 1 0.176, 2 0.043, 3 0.009) |
| neg model | (-3 0.000, -2 0.000, -1 0.235, 0 0.215, 1 0.205, 2 0.188, 3 0.157) |
| +5 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 582.6 |
| num_iterations | 27 |
| prior_probability | 0.337 |
| tot_num_spectra | 2865 |
| Comet discrim score [fval] negmean: -2.95 | |
| pos model | gaussian (mean 1.71, stdev 1.50) |
| neg model | gaussian (mean -1.81, stdev 1.14) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.000, ntt=1 0.022, ntt=2 0.978) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.379, 1<=nmc<=2 0.621, nmc>=3 0.000) |
| neg model | (nmc=0 0.142, 1<=nmc<=2 0.835, nmc>=3 0.023) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010872 |
| pos_bandwidth | 0.010872 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.004, 0 0.804, 1 0.177, 2 0.013, 3 0.001) |
| neg model | (-3 0.000, -2 0.000, -1 0.204, 0 0.178, 1 0.220, 2 0.199, 3 0.199) |
| +6 Models | |
| comments | using training data negative distributions |
| est_tot_correct | 0.0 |
| num_iterations | 21 |
| prior_probability | 0.000 |
| tot_num_spectra | 0 |
| Comet discrim score [fval] negmean: -5.00 | |
| pos model | gaussian (mean 4.56, stdev 1.24) |
| neg model | gaussian (mean 0.00, stdev 3.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010872 |
| pos_bandwidth | 0.010872 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| +7 Models | |
| comments | using training data negative distributions |
| est_tot_correct | 0.0 |
| num_iterations | 21 |
| prior_probability | 0.000 |
| tot_num_spectra | 0 |
| Comet discrim score [fval] negmean: -5.00 | |
| pos model | gaussian (mean 4.56, stdev 1.24) |
| neg model | gaussian (mean 0.00, stdev 3.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010872 |
| pos_bandwidth | 0.010872 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| MS run: /home/sean/Documents/proteome/20161205_Sample_36 | |
|---|---|
| msManufacturer | Thermo |
| msModel | Orbitrap Fusion Lumos |
| raw_data | .mzXML |
| raw_data_type | raw |
| sample_enzyme | |
| name | trypsin |
| specificity | cut: KR no_cut: P sense: C |
| search_summary | |
| base_name | /home/sean/Documents/proteome/20161205_Sample_36 |
| fragment_mass_type | monoisotopic |
| precursor_mass_type | monoisotopic |
| search_engine | Comet |
| search_engine_version | 2016.01 rev. 2 |
| search_id | 1 |
| search_database | |
| local_path | Cg-Giga_cont_AA.fa |
| type | AA |
| enzymatic_search_constraint | |
| enzyme | Trypsin |
| max_num_internal_cleavages | 2 |
| min_number_termini | 2 |
| Aminoacid and Terminal Modifications | |
| M | mass: 147.035385 massdiff: 15.994900 symbol: * variable: Y |
| C | mass: 160.030649 massdiff: 57.021464 variable: N |
| Search Parameters | |
| # comet_version | 2016.01 rev. 0 |
| activation_method | ALL |
| add_A_alanine | 0.000000 |
| add_B_user_amino_acid | 0.000000 |
| add_C_cysteine | 57.021464 |
| add_Cterm_peptide | 0.000000 |
| add_Cterm_protein | 0.000000 |
| add_D_aspartic_acid | 0.000000 |
| add_E_glutamic_acid | 0.000000 |
| add_F_phenylalanine | 0.000000 |
| add_G_glycine | 0.000000 |
| add_H_histidine | 0.000000 |
| add_I_isoleucine | 0.000000 |
| add_J_user_amino_acid | 0.000000 |
| add_K_lysine | 0.000000 |
| add_L_leucine | 0.000000 |
| add_M_methionine | 0.000000 |
| add_N_asparagine | 0.000000 |
| add_Nterm_peptide | 0.000000 |
| add_Nterm_protein | 0.000000 |
| add_O_ornithine | 0.000000 |
| add_P_proline | 0.000000 |
| add_Q_glutamine | 0.000000 |
| add_R_arginine | 0.000000 |
| add_S_serine | 0.000000 |
| add_T_threonine | 0.000000 |
| add_U_celenocysteinee | 0.000000 |
| add_V_valine | 0.000000 |
| add_W_tryptophan | 0.000000 |
| add_X_user_amino_acid | 0.000000 |
| add_Y_tyrosine | 0.000000 |
| add_Z_user_amino_acid | 0.000000 |
| allowed_missed_cleavage | 2 |
| clear_mz_range | 0.000000 0.000000 |
| clip_nterm_methionine | 0 |
| database_name | Cg-Giga_cont_AA.fa |
| decoy_prefix | DECOY_ |
| decoy_search | 1 |
| digest_mass_range | 600.000000 5000.000000 |
| fragment_bin_offset | 0.400000 |
| fragment_bin_tol | 1.000500 |
| isotope_error | 1 |
| mass_offsets | |
| mass_type_fragment | 1 |
| mass_type_parent | 1 |
| max_fragment_charge | 3 |
| max_precursor_charge | 6 |
| max_variable_mods_in_peptide | 5 |
| minimum_intensity | 0 |
| minimum_peaks | 10 |
| ms_level | 2 |
| nucleotide_reading_frame | 0 |
| num_enzyme_termini | 2 |
| num_output_lines | 5 |
| num_results | 100 |
| num_threads | 8 |
| output_outfiles | 0 |
| output_pepxmlfile | 1 |
| output_percolatorfile | 0 |
| output_sqtfile | 0 |
| output_sqtstream | 0 |
| output_suffix | |
| output_txtfile | 0 |
| override_charge | 0 |
| peptide_mass_tolerance | 20.000000 |
| peptide_mass_units | 2 |
| precursor_charge | 0 0 |
| precursor_tolerance_type | 1 |
| print_expect_score | 1 |
| remove_precursor_peak | 0 |
| remove_precursor_tolerance | 1.500000 |
| require_variable_mod | 0 |
| sample_enzyme_number | 1 |
| scan_range | 0 0 |
| search_enzyme_number | 1 |
| show_fragment_ions | 0 |
| skip_researching | 1 |
| spectrum_batch_size | 0 |
| theoretical_fragment_ions | 1 |
| use_A_ions | 0 |
| use_B_ions | 1 |
| use_C_ions | 0 |
| use_NL_ions | 0 |
| use_X_ions | 0 |
| use_Y_ions | 1 |
| use_Z_ions | 0 |
| variable_mod01 | 15.994900 M 0 3 -1 0 0 |
| variable_mod02 | 0.000000 X 0 3 -1 0 0 |
| variable_mod03 | 0.000000 X 0 3 -1 0 0 |
| variable_mod04 | 0.000000 X 0 3 -1 0 0 |
| variable_mod05 | 0.000000 X 0 3 -1 0 0 |
| variable_mod06 | 0.000000 X 0 3 -1 0 0 |
| variable_mod07 | 0.000000 X 0 3 -1 0 0 |
| variable_mod08 | 0.000000 X 0 3 -1 0 0 |
| variable_mod09 | 0.000000 X 0 3 -1 0 0 |
| Analysis Timestamps | |
| peptideprophet | 2017-02-20T13:52:12 (id: 1) |
| database_refresh | 2017-02-20T13:52:00 (id: 1) |
| database | Cg-Giga_cont_AA.fa |
| min_num_enz_term | 0 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 0.9999 | 0.5084 | 0.0000 | 21287 | 0 |
| 0.9990 | 0.6004 | 0.0001 | 25141 | 2 |
| 0.9900 | 0.7154 | 0.0007 | 29954 | 22 |
| 0.9800 | 0.7539 | 0.0015 | 31566 | 46 |
| 0.9500 | 0.8081 | 0.0036 | 33835 | 124 |
| 0.9000 | 0.8543 | 0.0077 | 35770 | 276 |
| 0.8500 | 0.8829 | 0.0119 | 36967 | 446 |
| 0.8000 | 0.9041 | 0.0164 | 37854 | 633 |
| 0.7500 | 0.9204 | 0.0211 | 38539 | 830 |
| 0.7000 | 0.9328 | 0.0256 | 39055 | 1025 |
| 0.6500 | 0.9426 | 0.0301 | 39467 | 1223 |
| 0.6000 | 0.9492 | 0.0338 | 39744 | 1390 |
| 0.5500 | 0.9552 | 0.0379 | 39995 | 1576 |
| 0.5000 | 0.9608 | 0.0426 | 40229 | 1788 |
| 0.4500 | 0.9659 | 0.0477 | 40443 | 2025 |
| 0.4000 | 0.9705 | 0.0533 | 40635 | 2287 |
| 0.3500 | 0.9747 | 0.0595 | 40812 | 2582 |
| 0.3000 | 0.9790 | 0.0673 | 40993 | 2958 |
| 0.2500 | 0.9830 | 0.0763 | 41161 | 3401 |
| 0.2000 | 0.9862 | 0.0856 | 41294 | 3864 |
| 0.1500 | 0.9897 | 0.0989 | 41438 | 4550 |
| 0.1000 | 0.9931 | 0.1180 | 41580 | 5563 |
| 0.0500 | 0.9965 | 0.1509 | 41723 | 7412 |
| 0.0000 | 1.0000 | 0.5537 | 41870 | 51956 |
| +2 only | ||||
| 0.9999 | 0.4789 | 0.0000 | 10118 | 0 |
| 0.9990 | 0.5823 | 0.0001 | 12304 | 1 |
| 0.9900 | 0.7125 | 0.0008 | 15053 | 13 |
| 0.9800 | 0.7559 | 0.0016 | 15970 | 26 |
| 0.9500 | 0.8158 | 0.0040 | 17236 | 69 |
| 0.9000 | 0.8659 | 0.0083 | 18294 | 153 |
| 0.8500 | 0.8968 | 0.0128 | 18947 | 245 |
| 0.8000 | 0.9182 | 0.0172 | 19400 | 340 |
| 0.7500 | 0.9350 | 0.0219 | 19755 | 442 |
| 0.7000 | 0.9455 | 0.0257 | 19977 | 526 |
| 0.6500 | 0.9518 | 0.0285 | 20109 | 589 |
| 0.6000 | 0.9571 | 0.0315 | 20222 | 658 |
| 0.5500 | 0.9623 | 0.0351 | 20332 | 739 |
| 0.5000 | 0.9667 | 0.0387 | 20424 | 823 |
| 0.4500 | 0.9710 | 0.0430 | 20515 | 923 |
| 0.4000 | 0.9750 | 0.0480 | 20600 | 1039 |
| 0.3500 | 0.9785 | 0.0532 | 20674 | 1162 |
| 0.3000 | 0.9819 | 0.0594 | 20745 | 1311 |
| 0.2500 | 0.9852 | 0.0671 | 20816 | 1498 |
| 0.2000 | 0.9882 | 0.0759 | 20879 | 1716 |
| 0.1500 | 0.9911 | 0.0875 | 20940 | 2007 |
| 0.1000 | 0.9943 | 0.1063 | 21009 | 2498 |
| 0.0500 | 0.9973 | 0.1352 | 21071 | 3295 |
| 0.0000 | 1.0000 | 0.4893 | 21128 | 20241 |
| +3 only | ||||
| 0.9999 | 0.5582 | 0.0000 | 8982 | 0 |
| 0.9990 | 0.6347 | 0.0001 | 10212 | 1 |
| 0.9900 | 0.7286 | 0.0006 | 11723 | 7 |
| 0.9800 | 0.7600 | 0.0012 | 12229 | 14 |
| 0.9500 | 0.8071 | 0.0031 | 12986 | 41 |
| 0.9000 | 0.8475 | 0.0067 | 13637 | 92 |
| 0.8500 | 0.8734 | 0.0106 | 14054 | 151 |
| 0.8000 | 0.8946 | 0.0153 | 14395 | 223 |
| 0.7500 | 0.9106 | 0.0199 | 14652 | 298 |
| 0.7000 | 0.9246 | 0.0251 | 14878 | 383 |
| 0.6500 | 0.9380 | 0.0313 | 15093 | 488 |
| 0.6000 | 0.9448 | 0.0351 | 15203 | 553 |
| 0.5500 | 0.9510 | 0.0394 | 15303 | 627 |
| 0.5000 | 0.9575 | 0.0448 | 15407 | 723 |
| 0.4500 | 0.9631 | 0.0504 | 15497 | 822 |
| 0.4000 | 0.9677 | 0.0560 | 15572 | 923 |
| 0.3500 | 0.9725 | 0.0629 | 15648 | 1050 |
| 0.3000 | 0.9775 | 0.0719 | 15729 | 1219 |
| 0.2500 | 0.9821 | 0.0822 | 15803 | 1415 |
| 0.2000 | 0.9853 | 0.0913 | 15854 | 1592 |
| 0.1500 | 0.9889 | 0.1050 | 15911 | 1868 |
| 0.1000 | 0.9923 | 0.1238 | 15966 | 2256 |
| 0.0500 | 0.9960 | 0.1592 | 16026 | 3034 |
| 0.0000 | 1.0000 | 0.5773 | 16091 | 21972 |
| +4 only | ||||
| 0.9999 | 0.4979 | 0.0000 | 2026 | 0 |
| 0.9990 | 0.5866 | 0.0001 | 2387 | 0 |
| 0.9900 | 0.6982 | 0.0007 | 2841 | 2 |
| 0.9800 | 0.7367 | 0.0015 | 2998 | 4 |
| 0.9500 | 0.7851 | 0.0035 | 3195 | 11 |
| 0.9000 | 0.8314 | 0.0076 | 3383 | 26 |
| 0.8500 | 0.8562 | 0.0114 | 3484 | 40 |
| 0.8000 | 0.8744 | 0.0155 | 3558 | 56 |
| 0.7500 | 0.8899 | 0.0200 | 3621 | 74 |
| 0.7000 | 0.9056 | 0.0259 | 3685 | 98 |
| 0.6500 | 0.9199 | 0.0325 | 3743 | 126 |
| 0.6000 | 0.9316 | 0.0391 | 3791 | 154 |
| 0.5500 | 0.9401 | 0.0449 | 3825 | 180 |
| 0.5000 | 0.9480 | 0.0513 | 3857 | 209 |
| 0.4500 | 0.9551 | 0.0583 | 3886 | 241 |
| 0.4000 | 0.9616 | 0.0661 | 3913 | 277 |
| 0.3500 | 0.9672 | 0.0741 | 3936 | 315 |
| 0.3000 | 0.9732 | 0.0845 | 3960 | 366 |
| 0.2500 | 0.9771 | 0.0931 | 3976 | 408 |
| 0.2000 | 0.9815 | 0.1051 | 3994 | 469 |
| 0.1500 | 0.9865 | 0.1235 | 4014 | 566 |
| 0.1000 | 0.9906 | 0.1449 | 4031 | 683 |
| 0.0500 | 0.9949 | 0.1831 | 4048 | 908 |
| 0.0000 | 1.0000 | 0.6471 | 4069 | 7460 |
| +5 only | ||||
| 0.9999 | 0.2764 | 0.0000 | 161 | 0 |
| 0.9990 | 0.4085 | 0.0002 | 238 | 0 |
| 0.9900 | 0.5777 | 0.0014 | 337 | 0 |
| 0.9800 | 0.6353 | 0.0025 | 370 | 1 |
| 0.9500 | 0.7183 | 0.0060 | 418 | 3 |
| 0.9000 | 0.7817 | 0.0122 | 455 | 6 |
| 0.8500 | 0.8282 | 0.0193 | 482 | 10 |
| 0.8000 | 0.8608 | 0.0262 | 502 | 13 |
| 0.7500 | 0.8768 | 0.0308 | 511 | 16 |
| 0.7000 | 0.8843 | 0.0335 | 515 | 18 |
| 0.6500 | 0.8948 | 0.0382 | 521 | 21 |
| 0.6000 | 0.9065 | 0.0450 | 528 | 25 |
| 0.5500 | 0.9184 | 0.0531 | 535 | 30 |
| 0.5000 | 0.9266 | 0.0596 | 540 | 34 |
| 0.4500 | 0.9349 | 0.0674 | 545 | 39 |
| 0.4000 | 0.9451 | 0.0793 | 551 | 47 |
| 0.3500 | 0.9522 | 0.0892 | 555 | 54 |
| 0.3000 | 0.9588 | 0.1005 | 559 | 62 |
| 0.2500 | 0.9704 | 0.1249 | 565 | 81 |
| 0.2000 | 0.9735 | 0.1328 | 567 | 87 |
| 0.1500 | 0.9818 | 0.1613 | 572 | 110 |
| 0.1000 | 0.9855 | 0.1798 | 574 | 126 |
| 0.0500 | 0.9919 | 0.2326 | 578 | 175 |
| 0.0000 | 1.0000 | 0.7967 | 583 | 2282 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 7510 | 0 |
| 0.0001 | 0.9987 | 25559 | 3 |
| 0.0002 | 0.9973 | 27047 | 5 |
| 0.0003 | 0.9959 | 27934 | 8 |
| 0.0004 | 0.9945 | 28574 | 11 |
| 0.0005 | 0.9931 | 29075 | 15 |
| 0.0006 | 0.9918 | 29491 | 18 |
| 0.0007 | 0.9904 | 29849 | 21 |
| 0.0008 | 0.9889 | 30159 | 24 |
| 0.0009 | 0.9876 | 30433 | 27 |
| 0.0010 | 0.9862 | 30680 | 31 |
| 0.0015 | 0.9793 | 31648 | 48 |
| 0.0020 | 0.9724 | 32353 | 65 |
| 0.0025 | 0.9650 | 32900 | 82 |
| 0.0030 | 0.9582 | 33349 | 100 |
| 0.0040 | 0.9456 | 34075 | 137 |
| 0.0050 | 0.9322 | 34649 | 174 |
| 0.0060 | 0.9197 | 35123 | 212 |
| 0.0070 | 0.9076 | 35531 | 251 |
| 0.0080 | 0.8960 | 35889 | 290 |
| 0.0090 | 0.8838 | 36208 | 329 |
| 0.0100 | 0.8710 | 36493 | 369 |
| 0.0150 | 0.8151 | 37602 | 573 |
| 0.0200 | 0.7623 | 38395 | 784 |
| 0.0250 | 0.7058 | 38996 | 1000 |
| 0.0300 | 0.6504 | 39463 | 1221 |
| 0.0400 | 0.5267 | 40106 | 1672 |
| 0.0500 | 0.4261 | 40528 | 2134 |
| 0.0750 | 0.2582 | 41139 | 3336 |
| 0.1000 | 0.1470 | 41448 | 4606 |
| +2 only | |||
| 0.0000 | 1.0000 | 3778 | 0 |
| 0.0001 | 0.9989 | 12361 | 1 |
| 0.0002 | 0.9977 | 13218 | 3 |
| 0.0003 | 0.9965 | 13721 | 4 |
| 0.0004 | 0.9952 | 14088 | 6 |
| 0.0005 | 0.9939 | 14376 | 7 |
| 0.0006 | 0.9927 | 14611 | 9 |
| 0.0007 | 0.9915 | 14814 | 10 |
| 0.0008 | 0.9904 | 14992 | 12 |
| 0.0009 | 0.9891 | 15151 | 14 |
| 0.0010 | 0.9879 | 15294 | 15 |
| 0.0015 | 0.9815 | 15849 | 24 |
| 0.0020 | 0.9757 | 16251 | 33 |
| 0.0025 | 0.9688 | 16567 | 42 |
| 0.0030 | 0.9625 | 16824 | 51 |
| 0.0040 | 0.9502 | 17232 | 69 |
| 0.0050 | 0.9374 | 17553 | 88 |
| 0.0060 | 0.9254 | 17816 | 108 |
| 0.0070 | 0.9148 | 18043 | 127 |
| 0.0080 | 0.9031 | 18242 | 147 |
| 0.0090 | 0.8924 | 18419 | 167 |
| 0.0100 | 0.8812 | 18579 | 188 |
| 0.0150 | 0.8253 | 19193 | 293 |
| 0.0200 | 0.7712 | 19622 | 401 |
| 0.0250 | 0.7103 | 19942 | 512 |
| 0.0300 | 0.6192 | 20171 | 624 |
| 0.0400 | 0.4830 | 20454 | 853 |
| 0.0500 | 0.3792 | 20631 | 1086 |
| 0.0750 | 0.2048 | 20873 | 1694 |
| 0.1000 | 0.1132 | 20989 | 2334 |
| +3 only | |||
| 0.0000 | 1.0000 | 2897 | 0 |
| 0.0001 | 0.9983 | 10503 | 1 |
| 0.0002 | 0.9966 | 10971 | 2 |
| 0.0003 | 0.9948 | 11252 | 3 |
| 0.0004 | 0.9932 | 11453 | 5 |
| 0.0005 | 0.9916 | 11612 | 6 |
| 0.0006 | 0.9897 | 11744 | 7 |
| 0.0007 | 0.9878 | 11854 | 8 |
| 0.0008 | 0.9862 | 11949 | 10 |
| 0.0009 | 0.9843 | 12035 | 11 |
| 0.0010 | 0.9830 | 12112 | 12 |
| 0.0015 | 0.9748 | 12416 | 19 |
| 0.0020 | 0.9662 | 12638 | 25 |
| 0.0025 | 0.9588 | 12811 | 32 |
| 0.0030 | 0.9514 | 12958 | 39 |
| 0.0040 | 0.9371 | 13198 | 53 |
| 0.0050 | 0.9226 | 13389 | 67 |
| 0.0060 | 0.9082 | 13546 | 82 |
| 0.0070 | 0.8952 | 13681 | 97 |
| 0.0080 | 0.8818 | 13800 | 111 |
| 0.0090 | 0.8685 | 13905 | 126 |
| 0.0100 | 0.8574 | 13999 | 142 |
| 0.0150 | 0.8028 | 14378 | 219 |
| 0.0200 | 0.7484 | 14657 | 300 |
| 0.0250 | 0.7009 | 14873 | 382 |
| 0.0300 | 0.6584 | 15053 | 466 |
| 0.0400 | 0.5422 | 15316 | 639 |
| 0.0500 | 0.4519 | 15493 | 816 |
| 0.0750 | 0.2845 | 15753 | 1279 |
| 0.1000 | 0.1656 | 15893 | 1767 |
| +4 only | |||
| 0.0000 | 1.0000 | 734 | 0 |
| 0.0001 | 0.9987 | 2432 | 0 |
| 0.0002 | 0.9973 | 2571 | 1 |
| 0.0003 | 0.9958 | 2657 | 1 |
| 0.0004 | 0.9946 | 2718 | 1 |
| 0.0005 | 0.9931 | 2766 | 1 |
| 0.0006 | 0.9918 | 2805 | 2 |
| 0.0007 | 0.9901 | 2838 | 2 |
| 0.0008 | 0.9882 | 2867 | 2 |
| 0.0009 | 0.9872 | 2891 | 3 |
| 0.0010 | 0.9862 | 2914 | 3 |
| 0.0015 | 0.9795 | 3005 | 5 |
| 0.0020 | 0.9711 | 3071 | 6 |
| 0.0025 | 0.9636 | 3121 | 8 |
| 0.0030 | 0.9560 | 3161 | 10 |
| 0.0040 | 0.9439 | 3228 | 13 |
| 0.0050 | 0.9327 | 3281 | 17 |
| 0.0060 | 0.9193 | 3326 | 20 |
| 0.0070 | 0.9079 | 3364 | 24 |
| 0.0080 | 0.8932 | 3398 | 28 |
| 0.0090 | 0.8805 | 3427 | 31 |
| 0.0100 | 0.8671 | 3453 | 35 |
| 0.0150 | 0.8029 | 3552 | 54 |
| 0.0200 | 0.7499 | 3623 | 74 |
| 0.0250 | 0.7072 | 3677 | 95 |
| 0.0300 | 0.6690 | 3723 | 116 |
| 0.0400 | 0.5880 | 3798 | 159 |
| 0.0500 | 0.5105 | 3852 | 203 |
| 0.0750 | 0.3479 | 3939 | 320 |
| 0.1000 | 0.2209 | 3987 | 444 |
| +5 only | |||
| 0.0000 | 1.0000 | 107 | 0 |
| 0.0001 | 0.9994 | 219 | 0 |
| 0.0002 | 0.9988 | 249 | 0 |
| 0.0003 | 0.9979 | 266 | 0 |
| 0.0004 | 0.9971 | 279 | 0 |
| 0.0005 | 0.9963 | 289 | 0 |
| 0.0006 | 0.9956 | 298 | 0 |
| 0.0007 | 0.9946 | 305 | 0 |
| 0.0008 | 0.9939 | 311 | 0 |
| 0.0009 | 0.9933 | 317 | 0 |
| 0.0010 | 0.9928 | 322 | 0 |
| 0.0015 | 0.9891 | 343 | 1 |
| 0.0020 | 0.9860 | 359 | 1 |
| 0.0025 | 0.9791 | 372 | 1 |
| 0.0030 | 0.9752 | 382 | 1 |
| 0.0040 | 0.9689 | 396 | 2 |
| 0.0050 | 0.9597 | 410 | 2 |
| 0.0060 | 0.9502 | 419 | 3 |
| 0.0070 | 0.9401 | 428 | 3 |
| 0.0080 | 0.9284 | 434 | 4 |
| 0.0090 | 0.9206 | 441 | 4 |
| 0.0100 | 0.9095 | 446 | 5 |
| 0.0150 | 0.8783 | 469 | 7 |
| 0.0200 | 0.8400 | 486 | 10 |
| 0.0250 | 0.8134 | 500 | 13 |
| 0.0300 | 0.7573 | 511 | 16 |
| 0.0400 | 0.6283 | 524 | 23 |
| 0.0500 | 0.5641 | 533 | 29 |
| 0.0750 | 0.4272 | 549 | 46 |
| 0.1000 | 0.3017 | 559 | 63 |
| peptideprophet | |
|---|---|
| time | 2017-02-20T13:52:12 |
| author | AKeller@ISB |
| est_tot_num_correct | 41870.4 |
| min_prob | 0.90 |
| options | DECOY=DECOY_ MINPROB=0.9 ACCMASS |
| type | unlinked |
| version | PeptideProphet (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| inputfile | /home/sean/Documents/proteome/20161205_Sample_36.pep.xml |
| database_refresh | |
| time | 2017-02-20T13:52:00 |
| interact | |
| time | 2017-02-20T13:51:17 |
| directory | /home/sean/Documents/proteome |
| filename | /home/sean/Documents/proteome/interact-20161205_Sample_36.pep.xml |
| directory | /home/sean/Documents/proteome |
| inputfile | 20161205_Sample_36.pep.xml |
| tpp_models | |
| time | Mon Feb 20 13:54:33 2017 |