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Predicted Sensitivity and Error Rate

Learned NSP distributions

bin_number	nsp_range	pos_freq	neg_freq	pos/neg_ratio
Learned Number of Sibling Peptide Distributions
Neighboring bin smoothing: Y
0	0.00 < nsp <= 0.25	0.041	0.379	0.11
1	0.25 < nsp <= 0.81	0.034	0.144	0.23
2	0.81 < nsp <= 1.53	0.057	0.113	0.51
3	1.53 < nsp <= 2.46	0.074	0.133	0.55
4	2.46 < nsp <= 3.80	0.089	0.083	1.07
5	3.80 < nsp <= 5.63	0.105	0.054	1.94
6	5.63 < nsp <= 8.71	0.124	0.037	3.33
7	8.71 < nsp <= 14.42	0.146	0.026	5.70
8	14.42 < nsp <= 26.72	0.157	0.016	9.98
9	26.72 < nsp < inf	0.174	0.015	11.61

min_prob	Sensitivity	Error_Rate	num_correct	num_incorrect
Predicted Sensitivity and Error Rate
1.00	0.416	0.000	1568	0
0.99	0.779	0.001	2939	4
0.98	0.838	0.002	3158	7
0.97	0.859	0.003	3237	9
0.96	0.868	0.003	3272	10
0.95	0.879	0.004	3313	12
0.90	0.905	0.006	3414	20
0.80	0.938	0.011	3535	41
0.70	0.958	0.018	3611	66
0.60	0.975	0.027	3678	102
0.50	0.997	0.043	3759	167
0.40	1.000	0.045	3771	179
0.30	1.000	0.045	3771	179
0.20	1.000	0.045	3771	179
0.10	1.000	0.045	3771	179
0.00	1.000	0.045	3771	179

Error_Rate	min_prob	num_correct	num_incorrect
Error Table
0.0000	1.0000	1568	0
0.0014	0.9907	2939	4
0.0016	0.9898	3003	5
0.0020	0.9834	3126	6
0.0025	0.9753	3204	8
0.0030	0.9638	3263	10
0.0040	0.9416	3336	13
0.0050	0.9194	3386	17
0.0060	0.8966	3421	21
0.0070	0.8792	3450	24
0.0081	0.8545	3475	28
0.0091	0.8331	3495	32
0.0100	0.8184	3511	36
0.0150	0.7425	3580	55
0.0200	0.6751	3629	74
0.0251	0.6195	3666	94
0.0300	0.5817	3696	114
0.0401	0.5189	3748	156

protein_summary_header
initial_min_peptide_prob	0.05
min_peptide_probability	0.20
min_peptide_weight	0.50
num_input_1_spectra	0
num_input_2_spectra	18447
num_input_3_spectra	13729
num_input_4_spectra	3409
num_input_5_spectra	461
num_predicted_correct_prots	3770.5
reference_database	Cg-Giga_cont_AA.fa
residue_substitution_list	I -> L
sample_enzyme	trypsin
source_files	/home/sean/Documents/proteome/interact-20161205_Sample_36.pep.xml
source_files_alt	/home/sean/Documents/proteome/interact-20161205_Sample_36.pep.xml
total_no_spectrum_ids	35694.2
program_details
analysis	proteinprophet
time	2017-02-20T13:54:24
version	Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64))
proteinprophet_details
degen_flag	Y
final_peptide_wt_iters	4
fpkm_flag	N
groups_flag	Y
initial_peptide_wt_iters	2
nsp_distribution_iters	9
nsp_flag	Y
occam_flag	Y
tpp_models
time	Mon Feb 20 13:54:33 2017

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