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Predicted Sensitivity and Error Rate

Learned NSP distributions

bin_number	nsp_range	pos_freq	neg_freq	pos/neg_ratio
Learned Number of Sibling Peptide Distributions
Neighboring bin smoothing: Y
0	0.00 < nsp <= 0.27	0.039	0.440	0.09
1	0.27 < nsp <= 0.86	0.036	0.164	0.22
2	0.86 < nsp <= 1.59	0.058	0.088	0.66
3	1.59 < nsp <= 2.59	0.072	0.076	0.94
4	2.59 < nsp <= 3.91	0.088	0.074	1.18
5	3.91 < nsp <= 5.51	0.102	0.058	1.76
6	5.51 < nsp <= 8.81	0.126	0.042	3.00
7	8.81 < nsp <= 14.87	0.147	0.027	5.44
8	14.87 < nsp <= 26.93	0.159	0.018	8.82
9	26.93 < nsp < inf	0.173	0.013	13.60

min_prob	Sensitivity	Error_Rate	num_correct	num_incorrect
Predicted Sensitivity and Error Rate
1.00	0.428	0.000	1565	0
0.99	0.681	0.000	2491	0
0.98	0.834	0.002	3054	7
0.97	0.852	0.003	3117	9
0.96	0.865	0.003	3164	11
0.95	0.871	0.004	3189	12
0.90	0.903	0.006	3305	20
0.80	0.933	0.012	3414	40
0.70	0.955	0.019	3494	67
0.60	0.973	0.028	3561	103
0.50	0.990	0.041	3625	154
0.40	1.000	0.050	3660	194
0.30	1.000	0.050	3660	194
0.20	1.000	0.050	3660	194
0.10	1.000	0.050	3660	194
0.00	1.000	0.050	3660	194

Error_Rate	min_prob	num_correct	num_incorrect
Error Table
0.0000	1.0000	1565	0
0.0016	0.9889	2876	5
0.0020	0.9846	2996	6
0.0026	0.9759	3086	8
0.0030	0.9664	3139	9
0.0040	0.9437	3212	13
0.0050	0.9240	3262	16
0.0061	0.9031	3301	20
0.0070	0.8876	3330	23
0.0080	0.8561	3354	27
0.0090	0.8347	3373	31
0.0100	0.8180	3391	34
0.0150	0.7463	3458	53
0.0200	0.6878	3506	72
0.0251	0.6270	3543	91
0.0300	0.5818	3572	111
0.0400	0.5090	3621	151
0.0501	0.4462	3659	193

protein_summary_header
initial_min_peptide_prob	0.05
min_peptide_probability	0.20
min_peptide_weight	0.50
num_input_1_spectra	0
num_input_2_spectra	17379
num_input_3_spectra	13691
num_input_4_spectra	3375
num_input_5_spectra	456
num_predicted_correct_prots	3660.0
reference_database	Cg-Giga_cont_AA.fa
residue_substitution_list	I -> L
sample_enzyme	trypsin
source_files	/home/sean/Documents/proteome/interact-20161205_Sample_36A.pep.xml
source_files_alt	/home/sean/Documents/proteome/interact-20161205_Sample_36A.pep.xml
total_no_spectrum_ids	34561.7
program_details
analysis	proteinprophet
time	2017-02-20T13:51:09
version	Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64))
proteinprophet_details
degen_flag	Y
final_peptide_wt_iters	4
fpkm_flag	N
groups_flag	Y
initial_peptide_wt_iters	2
nsp_distribution_iters	9
nsp_flag	Y
occam_flag	Y
tpp_models
time	Mon Feb 20 13:51:17 2017

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