| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.26 | 0.042 | 0.447 | 0.09 |
| 1 | 0.26 < nsp <= 0.89 | 0.036 | 0.171 | 0.21 |
| 2 | 0.89 < nsp <= 1.54 | 0.058 | 0.101 | 0.58 |
| 3 | 1.54 < nsp <= 2.50 | 0.072 | 0.073 | 1.00 |
| 4 | 2.50 < nsp <= 3.72 | 0.084 | 0.054 | 1.56 |
| 5 | 3.72 < nsp <= 5.66 | 0.107 | 0.045 | 2.39 |
| 6 | 5.66 < nsp <= 8.28 | 0.128 | 0.040 | 3.24 |
| 7 | 8.28 < nsp <= 13.90 | 0.147 | 0.030 | 4.88 |
| 8 | 13.90 < nsp <= 26.80 | 0.160 | 0.022 | 7.37 |
| 9 | 26.80 < nsp < inf | 0.164 | 0.018 | 9.17 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.431 | 0.000 | 1753 | 0 |
| 0.99 | 0.680 | 0.000 | 2764 | 0 |
| 0.98 | 0.852 | 0.002 | 3462 | 9 |
| 0.97 | 0.865 | 0.003 | 3516 | 10 |
| 0.96 | 0.878 | 0.003 | 3568 | 12 |
| 0.95 | 0.885 | 0.004 | 3595 | 13 |
| 0.90 | 0.914 | 0.006 | 3714 | 22 |
| 0.80 | 0.939 | 0.010 | 3816 | 40 |
| 0.70 | 0.960 | 0.017 | 3901 | 69 |
| 0.60 | 0.977 | 0.026 | 3968 | 105 |
| 0.50 | 0.992 | 0.037 | 4031 | 156 |
| 0.40 | 1.000 | 0.045 | 4063 | 190 |
| 0.30 | 1.000 | 0.045 | 4063 | 190 |
| 0.20 | 1.000 | 0.045 | 4063 | 190 |
| 0.10 | 1.000 | 0.045 | 4063 | 190 |
| 0.00 | 1.000 | 0.045 | 4063 | 190 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1753 | 0 |
| 0.0001 | 0.9919 | 2760 | 0 |
| 0.0017 | 0.9894 | 3237 | 5 |
| 0.0020 | 0.9873 | 3354 | 7 |
| 0.0025 | 0.9790 | 3471 | 9 |
| 0.0030 | 0.9678 | 3539 | 11 |
| 0.0040 | 0.9422 | 3623 | 15 |
| 0.0050 | 0.9178 | 3675 | 19 |
| 0.0060 | 0.9007 | 3714 | 22 |
| 0.0070 | 0.8748 | 3746 | 27 |
| 0.0080 | 0.8486 | 3771 | 31 |
| 0.0090 | 0.8253 | 3792 | 34 |
| 0.0100 | 0.8075 | 3809 | 39 |
| 0.0151 | 0.7283 | 3878 | 59 |
| 0.0201 | 0.6685 | 3926 | 81 |
| 0.0250 | 0.6078 | 3964 | 102 |
| 0.0302 | 0.5644 | 3996 | 124 |
| 0.0401 | 0.4793 | 4044 | 169 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 19285 |
| num_input_3_spectra | 14315 |
| num_input_4_spectra | 2811 |
| num_input_5_spectra | 339 |
| num_predicted_correct_prots | 4062.7 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_3A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_3A.pep.xml |
| total_no_spectrum_ids | 36414.5 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T13:57:40 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 13:57:49 2017 |