+1 Models | |
---|---|
comments | using training data negative distributions |
est_tot_correct | 0.0 |
num_iterations | 21 |
prior_probability | 0.000 |
tot_num_spectra | 0 |
Comet discrim score [fval] negmean: 1.00 | |
pos model | gaussian (mean 2.00, stdev 0.40) |
neg model | gaussian (mean 0.00, stdev 3.16) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
Accurate Mass Model | |
neg_bandwidth | 0.010795 |
pos_bandwidth | 0.010795 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
+2 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 23915.9 |
num_iterations | 27 |
prior_probability | 0.720 |
tot_num_spectra | 42206 |
Comet discrim score [fval] negmean: -2.05 | |
pos model | gaussian (mean 2.97, stdev 2.12) |
neg model | gaussian (mean -0.94, stdev 1.11) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.023, ntt=2 0.977) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.949, 1<=nmc<=2 0.051, nmc>=3 0.000) |
neg model | (nmc=0 0.497, 1<=nmc<=2 0.502, nmc>=3 0.002) |
Accurate Mass Model | |
neg_bandwidth | 0.010795 |
pos_bandwidth | 0.010795 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.031, 0 0.853, 1 0.107, 2 0.008, 3 0.000) |
neg model | (-3 0.000, -2 0.000, -1 0.316, 0 0.303, 1 0.163, 2 0.119, 3 0.099) |
+3 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 17440.2 |
num_iterations | 26 |
prior_probability | 0.627 |
tot_num_spectra | 37669 |
Comet discrim score [fval] negmean: -1.60 | |
pos model | gaussian (mean 4.11, stdev 2.49) |
neg model | gaussian (mean -0.52, stdev 1.08) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.018, ntt=2 0.982) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.836, 1<=nmc<=2 0.164, nmc>=3 0.000) |
neg model | (nmc=0 0.302, 1<=nmc<=2 0.688, nmc>=3 0.010) |
Accurate Mass Model | |
neg_bandwidth | 0.010795 |
pos_bandwidth | 0.010795 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.022, 0 0.759, 1 0.163, 2 0.050, 3 0.007) |
neg model | (-3 0.000, -2 0.000, -1 0.240, 0 0.229, 1 0.199, 2 0.173, 3 0.160) |
+4 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 3519.0 |
num_iterations | 26 |
prior_probability | 0.530 |
tot_num_spectra | 9587 |
Comet discrim score [fval] negmean: -2.03 | |
pos model | gaussian (mean 1.95, stdev 1.52) |
neg model | gaussian (mean -1.21, stdev 0.82) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.021, ntt=2 0.979) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.704, 1<=nmc<=2 0.296, nmc>=3 0.000) |
neg model | (nmc=0 0.195, 1<=nmc<=2 0.789, nmc>=3 0.016) |
Accurate Mass Model | |
neg_bandwidth | 0.010795 |
pos_bandwidth | 0.010795 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.019, 0 0.753, 1 0.175, 2 0.045, 3 0.007) |
neg model | (-3 0.000, -2 0.000, -1 0.233, 0 0.220, 1 0.207, 2 0.177, 3 0.163) |
+5 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 374.4 |
num_iterations | 27 |
prior_probability | 0.312 |
tot_num_spectra | 1957 |
Comet discrim score [fval] negmean: -2.94 | |
pos model | gaussian (mean 1.85, stdev 1.43) |
neg model | gaussian (mean -1.76, stdev 1.18) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.024, ntt=2 0.976) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.592, 1<=nmc<=2 0.408, nmc>=3 0.000) |
neg model | (nmc=0 0.152, 1<=nmc<=2 0.827, nmc>=3 0.021) |
Accurate Mass Model | |
neg_bandwidth | 0.010795 |
pos_bandwidth | 0.010795 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.001, 0 0.811, 1 0.163, 2 0.025, 3 0.001) |
neg model | (-3 0.000, -2 0.000, -1 0.211, 0 0.194, 1 0.211, 2 0.199, 3 0.186) |
+6 Models | |
comments | using training data negative distributions |
est_tot_correct | 0.0 |
num_iterations | 21 |
prior_probability | 0.000 |
tot_num_spectra | 0 |
Comet discrim score [fval] negmean: -5.00 | |
pos model | gaussian (mean 4.56, stdev 1.24) |
neg model | gaussian (mean 0.00, stdev 3.16) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
Accurate Mass Model | |
neg_bandwidth | 0.010795 |
pos_bandwidth | 0.010795 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
+7 Models | |
comments | using training data negative distributions |
est_tot_correct | 0.0 |
num_iterations | 21 |
prior_probability | 0.000 |
tot_num_spectra | 0 |
Comet discrim score [fval] negmean: -5.00 | |
pos model | gaussian (mean 4.56, stdev 1.24) |
neg model | gaussian (mean 0.00, stdev 3.16) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
Accurate Mass Model | |
neg_bandwidth | 0.010795 |
pos_bandwidth | 0.010795 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
MS run: /home/sean/Documents/proteome/20161205_Sample_4 | |
---|---|
msManufacturer | Thermo |
msModel | Orbitrap Fusion Lumos |
raw_data | .mzXML |
raw_data_type | raw |
sample_enzyme | |
name | trypsin |
specificity | cut: KR no_cut: P sense: C |
search_summary | |
base_name | /home/sean/Documents/proteome/20161205_Sample_4 |
fragment_mass_type | monoisotopic |
precursor_mass_type | monoisotopic |
search_engine | Comet |
search_engine_version | 2016.01 rev. 2 |
search_id | 1 |
search_database | |
local_path | Cg-Giga_cont_AA.fa |
type | AA |
enzymatic_search_constraint | |
enzyme | Trypsin |
max_num_internal_cleavages | 2 |
min_number_termini | 2 |
Aminoacid and Terminal Modifications | |
M | mass: 147.035385 massdiff: 15.994900 symbol: * variable: Y |
C | mass: 160.030649 massdiff: 57.021464 variable: N |
Search Parameters | |
# comet_version | 2016.01 rev. 0 |
activation_method | ALL |
add_A_alanine | 0.000000 |
add_B_user_amino_acid | 0.000000 |
add_C_cysteine | 57.021464 |
add_Cterm_peptide | 0.000000 |
add_Cterm_protein | 0.000000 |
add_D_aspartic_acid | 0.000000 |
add_E_glutamic_acid | 0.000000 |
add_F_phenylalanine | 0.000000 |
add_G_glycine | 0.000000 |
add_H_histidine | 0.000000 |
add_I_isoleucine | 0.000000 |
add_J_user_amino_acid | 0.000000 |
add_K_lysine | 0.000000 |
add_L_leucine | 0.000000 |
add_M_methionine | 0.000000 |
add_N_asparagine | 0.000000 |
add_Nterm_peptide | 0.000000 |
add_Nterm_protein | 0.000000 |
add_O_ornithine | 0.000000 |
add_P_proline | 0.000000 |
add_Q_glutamine | 0.000000 |
add_R_arginine | 0.000000 |
add_S_serine | 0.000000 |
add_T_threonine | 0.000000 |
add_U_celenocysteinee | 0.000000 |
add_V_valine | 0.000000 |
add_W_tryptophan | 0.000000 |
add_X_user_amino_acid | 0.000000 |
add_Y_tyrosine | 0.000000 |
add_Z_user_amino_acid | 0.000000 |
allowed_missed_cleavage | 2 |
clear_mz_range | 0.000000 0.000000 |
clip_nterm_methionine | 0 |
database_name | Cg-Giga_cont_AA.fa |
decoy_prefix | DECOY_ |
decoy_search | 1 |
digest_mass_range | 600.000000 5000.000000 |
fragment_bin_offset | 0.400000 |
fragment_bin_tol | 1.000500 |
isotope_error | 1 |
mass_offsets | |
mass_type_fragment | 1 |
mass_type_parent | 1 |
max_fragment_charge | 3 |
max_precursor_charge | 6 |
max_variable_mods_in_peptide | 5 |
minimum_intensity | 0 |
minimum_peaks | 10 |
ms_level | 2 |
nucleotide_reading_frame | 0 |
num_enzyme_termini | 2 |
num_output_lines | 5 |
num_results | 100 |
num_threads | 8 |
output_outfiles | 0 |
output_pepxmlfile | 1 |
output_percolatorfile | 0 |
output_sqtfile | 0 |
output_sqtstream | 0 |
output_suffix | |
output_txtfile | 0 |
override_charge | 0 |
peptide_mass_tolerance | 20.000000 |
peptide_mass_units | 2 |
precursor_charge | 0 0 |
precursor_tolerance_type | 1 |
print_expect_score | 1 |
remove_precursor_peak | 0 |
remove_precursor_tolerance | 1.500000 |
require_variable_mod | 0 |
sample_enzyme_number | 1 |
scan_range | 0 0 |
search_enzyme_number | 1 |
show_fragment_ions | 0 |
skip_researching | 1 |
spectrum_batch_size | 0 |
theoretical_fragment_ions | 1 |
use_A_ions | 0 |
use_B_ions | 1 |
use_C_ions | 0 |
use_NL_ions | 0 |
use_X_ions | 0 |
use_Y_ions | 1 |
use_Z_ions | 0 |
variable_mod01 | 15.994900 M 0 3 -1 0 0 |
variable_mod02 | 0.000000 X 0 3 -1 0 0 |
variable_mod03 | 0.000000 X 0 3 -1 0 0 |
variable_mod04 | 0.000000 X 0 3 -1 0 0 |
variable_mod05 | 0.000000 X 0 3 -1 0 0 |
variable_mod06 | 0.000000 X 0 3 -1 0 0 |
variable_mod07 | 0.000000 X 0 3 -1 0 0 |
variable_mod08 | 0.000000 X 0 3 -1 0 0 |
variable_mod09 | 0.000000 X 0 3 -1 0 0 |
Analysis Timestamps | |
peptideprophet | 2017-02-20T14:29:40 (id: 1) |
database_refresh | 2017-02-20T14:29:29 (id: 1) |
database | Cg-Giga_cont_AA.fa |
min_num_enz_term | 0 |
Predicted Sensitivity and Error Rate | ||||
min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
---|---|---|---|---|
0.9999 | 0.5463 | 0.0000 | 24722 | 0 |
0.9990 | 0.6347 | 0.0001 | 28720 | 2 |
0.9900 | 0.7455 | 0.0007 | 33734 | 23 |
0.9800 | 0.7830 | 0.0013 | 35429 | 47 |
0.9500 | 0.8382 | 0.0035 | 37926 | 133 |
0.9000 | 0.8816 | 0.0071 | 39892 | 285 |
0.8500 | 0.9085 | 0.0110 | 41107 | 458 |
0.8000 | 0.9277 | 0.0150 | 41976 | 641 |
0.7500 | 0.9418 | 0.0190 | 42615 | 825 |
0.7000 | 0.9517 | 0.0225 | 43064 | 993 |
0.6500 | 0.9570 | 0.0250 | 43305 | 1109 |
0.6000 | 0.9619 | 0.0277 | 43526 | 1240 |
0.5500 | 0.9662 | 0.0307 | 43721 | 1384 |
0.5000 | 0.9705 | 0.0343 | 43913 | 1558 |
0.4500 | 0.9741 | 0.0380 | 44078 | 1741 |
0.4000 | 0.9776 | 0.0424 | 44238 | 1958 |
0.3500 | 0.9807 | 0.0469 | 44374 | 2186 |
0.3000 | 0.9834 | 0.0521 | 44500 | 2448 |
0.2500 | 0.9865 | 0.0593 | 44638 | 2813 |
0.2000 | 0.9894 | 0.0680 | 44769 | 3266 |
0.1500 | 0.9922 | 0.0794 | 44897 | 3875 |
0.1000 | 0.9948 | 0.0946 | 45014 | 4703 |
0.0500 | 0.9975 | 0.1216 | 45135 | 6250 |
0.0000 | 1.0000 | 0.5050 | 45250 | 46169 |
+2 only | ||||
0.9999 | 0.5164 | 0.0000 | 12350 | 0 |
0.9990 | 0.6168 | 0.0001 | 14751 | 1 |
0.9900 | 0.7414 | 0.0008 | 17731 | 13 |
0.9800 | 0.7846 | 0.0015 | 18766 | 28 |
0.9500 | 0.8477 | 0.0040 | 20274 | 80 |
0.9000 | 0.8930 | 0.0076 | 21358 | 164 |
0.8500 | 0.9220 | 0.0118 | 22050 | 263 |
0.8000 | 0.9408 | 0.0156 | 22500 | 357 |
0.7500 | 0.9541 | 0.0193 | 22819 | 448 |
0.7000 | 0.9608 | 0.0216 | 22978 | 507 |
0.6500 | 0.9651 | 0.0236 | 23081 | 557 |
0.6000 | 0.9688 | 0.0257 | 23170 | 611 |
0.5500 | 0.9724 | 0.0282 | 23257 | 674 |
0.5000 | 0.9757 | 0.0309 | 23335 | 744 |
0.4500 | 0.9788 | 0.0340 | 23408 | 825 |
0.4000 | 0.9816 | 0.0376 | 23476 | 918 |
0.3500 | 0.9837 | 0.0409 | 23527 | 1002 |
0.3000 | 0.9861 | 0.0452 | 23582 | 1118 |
0.2500 | 0.9884 | 0.0508 | 23638 | 1264 |
0.2000 | 0.9907 | 0.0581 | 23695 | 1461 |
0.1500 | 0.9932 | 0.0682 | 23752 | 1738 |
0.1000 | 0.9957 | 0.0832 | 23813 | 2162 |
0.0500 | 0.9981 | 0.1084 | 23871 | 2901 |
0.0000 | 1.0000 | 0.4334 | 23916 | 18290 |
+3 only | ||||
0.9999 | 0.5978 | 0.0000 | 10426 | 0 |
0.9990 | 0.6687 | 0.0001 | 11662 | 1 |
0.9900 | 0.7573 | 0.0005 | 13207 | 7 |
0.9800 | 0.7881 | 0.0011 | 13744 | 15 |
0.9500 | 0.8329 | 0.0028 | 14526 | 41 |
0.9000 | 0.8730 | 0.0062 | 15226 | 95 |
0.8500 | 0.8983 | 0.0100 | 15666 | 158 |
0.8000 | 0.9175 | 0.0141 | 16001 | 229 |
0.7500 | 0.9327 | 0.0185 | 16266 | 306 |
0.7000 | 0.9470 | 0.0236 | 16515 | 400 |
0.6500 | 0.9525 | 0.0261 | 16611 | 446 |
0.6000 | 0.9581 | 0.0293 | 16710 | 504 |
0.5500 | 0.9629 | 0.0326 | 16793 | 565 |
0.5000 | 0.9674 | 0.0364 | 16872 | 638 |
0.4500 | 0.9713 | 0.0404 | 16940 | 713 |
0.4000 | 0.9751 | 0.0451 | 17007 | 803 |
0.3500 | 0.9785 | 0.0502 | 17065 | 901 |
0.3000 | 0.9816 | 0.0559 | 17119 | 1013 |
0.2500 | 0.9854 | 0.0648 | 17186 | 1192 |
0.2000 | 0.9886 | 0.0743 | 17242 | 1385 |
0.1500 | 0.9917 | 0.0865 | 17296 | 1638 |
0.1000 | 0.9942 | 0.1010 | 17339 | 1949 |
0.0500 | 0.9969 | 0.1284 | 17387 | 2561 |
0.0000 | 1.0000 | 0.5370 | 17440 | 20229 |
+4 only | ||||
0.9999 | 0.5212 | 0.0000 | 1834 | 0 |
0.9990 | 0.6109 | 0.0001 | 2150 | 0 |
0.9900 | 0.7335 | 0.0007 | 2581 | 2 |
0.9800 | 0.7635 | 0.0013 | 2687 | 3 |
0.9500 | 0.8129 | 0.0033 | 2861 | 9 |
0.9000 | 0.8573 | 0.0073 | 3017 | 22 |
0.8500 | 0.8780 | 0.0103 | 3090 | 32 |
0.8000 | 0.8980 | 0.0146 | 3160 | 47 |
0.7500 | 0.9114 | 0.0186 | 3207 | 61 |
0.7000 | 0.9215 | 0.0223 | 3243 | 74 |
0.6500 | 0.9319 | 0.0271 | 3279 | 92 |
0.6000 | 0.9401 | 0.0319 | 3308 | 109 |
0.5500 | 0.9468 | 0.0365 | 3332 | 126 |
0.5000 | 0.9548 | 0.0433 | 3360 | 152 |
0.4500 | 0.9610 | 0.0495 | 3382 | 176 |
0.4000 | 0.9664 | 0.0561 | 3401 | 202 |
0.3500 | 0.9728 | 0.0654 | 3423 | 240 |
0.3000 | 0.9770 | 0.0728 | 3438 | 270 |
0.2500 | 0.9808 | 0.0811 | 3451 | 305 |
0.2000 | 0.9850 | 0.0933 | 3466 | 357 |
0.1500 | 0.9893 | 0.1094 | 3481 | 428 |
0.1000 | 0.9926 | 0.1274 | 3493 | 510 |
0.0500 | 0.9960 | 0.1608 | 3505 | 672 |
0.0000 | 1.0000 | 0.6329 | 3519 | 6068 |
+5 only | ||||
0.9999 | 0.2992 | 0.0000 | 112 | 0 |
0.9990 | 0.4193 | 0.0001 | 157 | 0 |
0.9900 | 0.5763 | 0.0012 | 216 | 0 |
0.9800 | 0.6211 | 0.0022 | 232 | 1 |
0.9500 | 0.7118 | 0.0057 | 266 | 2 |
0.9000 | 0.7788 | 0.0117 | 292 | 3 |
0.8500 | 0.8045 | 0.0158 | 301 | 5 |
0.8000 | 0.8419 | 0.0243 | 315 | 8 |
0.7500 | 0.8626 | 0.0302 | 323 | 10 |
0.7000 | 0.8760 | 0.0355 | 328 | 12 |
0.6500 | 0.8905 | 0.0420 | 333 | 15 |
0.6000 | 0.9005 | 0.0477 | 337 | 17 |
0.5500 | 0.9067 | 0.0519 | 339 | 19 |
0.5000 | 0.9234 | 0.0657 | 346 | 24 |
0.4500 | 0.9298 | 0.0717 | 348 | 27 |
0.4000 | 0.9457 | 0.0899 | 354 | 35 |
0.3500 | 0.9587 | 0.1072 | 359 | 43 |
0.3000 | 0.9639 | 0.1156 | 361 | 47 |
0.2500 | 0.9691 | 0.1258 | 363 | 52 |
0.2000 | 0.9773 | 0.1472 | 366 | 63 |
0.1500 | 0.9821 | 0.1625 | 368 | 71 |
0.1000 | 0.9862 | 0.1814 | 369 | 82 |
0.0500 | 0.9933 | 0.2380 | 372 | 116 |
0.0000 | 1.0000 | 0.8087 | 374 | 1583 |
Error Table | |||
Error_Rate | min_prob | num_correct | num_incorrect |
---|---|---|---|
0.0000 | 1.0000 | 8092 | 0 |
0.0001 | 0.9986 | 29340 | 3 |
0.0002 | 0.9971 | 30910 | 6 |
0.0003 | 0.9957 | 31853 | 10 |
0.0004 | 0.9942 | 32535 | 13 |
0.0005 | 0.9926 | 33058 | 17 |
0.0006 | 0.9909 | 33487 | 20 |
0.0007 | 0.9895 | 33850 | 24 |
0.0008 | 0.9881 | 34175 | 27 |
0.0009 | 0.9866 | 34463 | 31 |
0.0010 | 0.9851 | 34723 | 35 |
0.0015 | 0.9776 | 35727 | 54 |
0.0020 | 0.9705 | 36459 | 73 |
0.0025 | 0.9635 | 37040 | 93 |
0.0030 | 0.9566 | 37525 | 113 |
0.0040 | 0.9431 | 38302 | 154 |
0.0050 | 0.9294 | 38916 | 196 |
0.0060 | 0.9155 | 39424 | 238 |
0.0070 | 0.9013 | 39852 | 281 |
0.0080 | 0.8883 | 40222 | 325 |
0.0090 | 0.8746 | 40547 | 368 |
0.0100 | 0.8620 | 40839 | 413 |
0.0150 | 0.8003 | 41970 | 639 |
0.0200 | 0.7371 | 42753 | 873 |
0.0250 | 0.6492 | 43309 | 1111 |
0.0300 | 0.5604 | 43680 | 1351 |
0.0400 | 0.4266 | 44155 | 1841 |
0.0500 | 0.3190 | 44452 | 2341 |
0.0750 | 0.1678 | 44853 | 3638 |
0.1000 | 0.0869 | 45046 | 5006 |
+2 only | |||
0.0000 | 1.0000 | 4241 | 0 |
0.0001 | 0.9988 | 14925 | 1 |
0.0002 | 0.9976 | 15869 | 3 |
0.0003 | 0.9962 | 16435 | 5 |
0.0004 | 0.9949 | 16840 | 7 |
0.0005 | 0.9934 | 17156 | 9 |
0.0006 | 0.9921 | 17414 | 10 |
0.0007 | 0.9905 | 17630 | 12 |
0.0008 | 0.9894 | 17819 | 14 |
0.0009 | 0.9882 | 17990 | 16 |
0.0010 | 0.9869 | 18145 | 18 |
0.0015 | 0.9802 | 18751 | 28 |
0.0020 | 0.9739 | 19190 | 38 |
0.0025 | 0.9675 | 19537 | 49 |
0.0030 | 0.9613 | 19826 | 60 |
0.0040 | 0.9494 | 20295 | 82 |
0.0050 | 0.9359 | 20664 | 104 |
0.0060 | 0.9232 | 20966 | 127 |
0.0070 | 0.9093 | 21217 | 150 |
0.0080 | 0.8958 | 21432 | 173 |
0.0090 | 0.8821 | 21621 | 196 |
0.0100 | 0.8701 | 21789 | 220 |
0.0150 | 0.8087 | 22438 | 342 |
0.0200 | 0.7372 | 22873 | 467 |
0.0250 | 0.6157 | 23145 | 594 |
0.0300 | 0.5160 | 23311 | 722 |
0.0400 | 0.3600 | 23515 | 981 |
0.0500 | 0.2560 | 23631 | 1245 |
0.0750 | 0.1273 | 23783 | 1930 |
0.1000 | 0.0632 | 23856 | 2652 |
+3 only | |||
0.0000 | 1.0000 | 3154 | 0 |
0.0001 | 0.9981 | 12030 | 1 |
0.0002 | 0.9963 | 12506 | 3 |
0.0003 | 0.9944 | 12796 | 4 |
0.0004 | 0.9925 | 13000 | 5 |
0.0005 | 0.9906 | 13160 | 7 |
0.0006 | 0.9890 | 13296 | 8 |
0.0007 | 0.9871 | 13413 | 9 |
0.0008 | 0.9853 | 13515 | 11 |
0.0009 | 0.9836 | 13606 | 12 |
0.0010 | 0.9814 | 13686 | 14 |
0.0015 | 0.9730 | 14006 | 21 |
0.0020 | 0.9645 | 14239 | 29 |
0.0025 | 0.9559 | 14425 | 36 |
0.0030 | 0.9470 | 14575 | 44 |
0.0040 | 0.9334 | 14824 | 60 |
0.0050 | 0.9191 | 15025 | 76 |
0.0060 | 0.9037 | 15192 | 92 |
0.0070 | 0.8897 | 15335 | 108 |
0.0080 | 0.8750 | 15458 | 125 |
0.0090 | 0.8618 | 15568 | 142 |
0.0100 | 0.8496 | 15669 | 158 |
0.0150 | 0.7898 | 16062 | 245 |
0.0200 | 0.7369 | 16346 | 334 |
0.0250 | 0.6724 | 16572 | 425 |
0.0300 | 0.5877 | 16730 | 518 |
0.0400 | 0.4538 | 16934 | 707 |
0.0500 | 0.3509 | 17064 | 899 |
0.0750 | 0.1969 | 17246 | 1399 |
0.1000 | 0.1028 | 17337 | 1928 |
+4 only | |||
0.0000 | 1.0000 | 628 | 0 |
0.0001 | 0.9987 | 2192 | 0 |
0.0002 | 0.9975 | 2321 | 0 |
0.0003 | 0.9962 | 2402 | 1 |
0.0004 | 0.9950 | 2462 | 1 |
0.0005 | 0.9936 | 2511 | 1 |
0.0006 | 0.9917 | 2546 | 2 |
0.0007 | 0.9901 | 2577 | 2 |
0.0008 | 0.9888 | 2603 | 2 |
0.0009 | 0.9872 | 2627 | 2 |
0.0010 | 0.9847 | 2646 | 3 |
0.0015 | 0.9759 | 2719 | 4 |
0.0020 | 0.9678 | 2769 | 6 |
0.0025 | 0.9618 | 2810 | 7 |
0.0030 | 0.9541 | 2844 | 9 |
0.0040 | 0.9388 | 2899 | 12 |
0.0050 | 0.9250 | 2942 | 15 |
0.0060 | 0.9136 | 2978 | 18 |
0.0070 | 0.9018 | 3011 | 21 |
0.0080 | 0.8912 | 3038 | 25 |
0.0090 | 0.8736 | 3064 | 28 |
0.0100 | 0.8537 | 3085 | 31 |
0.0150 | 0.7909 | 3167 | 49 |
0.0200 | 0.7303 | 3223 | 66 |
0.0250 | 0.6749 | 3265 | 84 |
0.0300 | 0.6123 | 3298 | 103 |
0.0400 | 0.5191 | 3348 | 140 |
0.0500 | 0.4444 | 3384 | 179 |
0.0750 | 0.2901 | 3442 | 280 |
0.1000 | 0.1761 | 3474 | 387 |
+5 only | |||
0.0000 | 1.0000 | 75 | 0 |
0.0001 | 0.9994 | 149 | 0 |
0.0002 | 0.9985 | 168 | 0 |
0.0003 | 0.9977 | 178 | 0 |
0.0004 | 0.9969 | 186 | 0 |
0.0005 | 0.9964 | 193 | 0 |
0.0006 | 0.9953 | 199 | 0 |
0.0007 | 0.9949 | 203 | 0 |
0.0008 | 0.9933 | 207 | 0 |
0.0009 | 0.9927 | 210 | 0 |
0.0010 | 0.9917 | 213 | 0 |
0.0015 | 0.9860 | 224 | 0 |
0.0020 | 0.9816 | 232 | 0 |
0.0025 | 0.9783 | 238 | 1 |
0.0030 | 0.9762 | 244 | 1 |
0.0040 | 0.9700 | 255 | 1 |
0.0050 | 0.9628 | 263 | 1 |
0.0060 | 0.9480 | 269 | 2 |
0.0070 | 0.9401 | 275 | 2 |
0.0080 | 0.9312 | 280 | 2 |
0.0090 | 0.9245 | 283 | 3 |
0.0100 | 0.9189 | 287 | 3 |
0.0150 | 0.8645 | 300 | 5 |
0.0200 | 0.8241 | 309 | 7 |
0.0250 | 0.7922 | 318 | 8 |
0.0300 | 0.7556 | 324 | 10 |
0.0400 | 0.6675 | 333 | 14 |
0.0500 | 0.5659 | 339 | 19 |
0.0750 | 0.4382 | 350 | 29 |
0.1000 | 0.3668 | 357 | 41 |
peptideprophet | |
---|---|
time | 2017-02-20T14:29:40 |
author | AKeller@ISB |
est_tot_num_correct | 45249.5 |
min_prob | 0.90 |
options | DECOY=DECOY_ MINPROB=0.9 ACCMASS |
type | unlinked |
version | PeptideProphet (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
inputfile | /home/sean/Documents/proteome/20161205_Sample_4.pep.xml |
database_refresh | |
time | 2017-02-20T14:29:29 |
interact | |
time | 2017-02-20T14:28:47 |
directory | /home/sean/Documents/proteome |
filename | /home/sean/Documents/proteome/interact-20161205_Sample_4.pep.xml |
directory | /home/sean/Documents/proteome |
inputfile | 20161205_Sample_4.pep.xml |
tpp_models | |
time | Mon Feb 20 14:32:14 2017 |