| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.24 | 0.037 | 0.392 | 0.09 |
| 1 | 0.24 < nsp <= 0.83 | 0.033 | 0.152 | 0.22 |
| 2 | 0.83 < nsp <= 1.61 | 0.060 | 0.119 | 0.51 |
| 3 | 1.61 < nsp <= 2.54 | 0.078 | 0.129 | 0.61 |
| 4 | 2.54 < nsp <= 3.97 | 0.094 | 0.080 | 1.17 |
| 5 | 3.97 < nsp <= 5.99 | 0.105 | 0.042 | 2.48 |
| 6 | 5.99 < nsp <= 8.99 | 0.127 | 0.029 | 4.33 |
| 7 | 8.99 < nsp <= 14.67 | 0.144 | 0.021 | 6.85 |
| 8 | 14.67 < nsp <= 25.01 | 0.155 | 0.016 | 9.56 |
| 9 | 25.01 < nsp < inf | 0.167 | 0.020 | 8.54 (9.56) |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.433 | 0.000 | 1812 | 0 |
| 0.99 | 0.696 | 0.000 | 2916 | 0 |
| 0.98 | 0.864 | 0.002 | 3617 | 9 |
| 0.97 | 0.876 | 0.003 | 3670 | 10 |
| 0.96 | 0.887 | 0.003 | 3716 | 11 |
| 0.95 | 0.894 | 0.003 | 3742 | 13 |
| 0.90 | 0.916 | 0.005 | 3838 | 20 |
| 0.80 | 0.943 | 0.010 | 3951 | 39 |
| 0.70 | 0.964 | 0.016 | 4035 | 68 |
| 0.60 | 0.978 | 0.024 | 4095 | 100 |
| 0.50 | 0.993 | 0.035 | 4158 | 151 |
| 0.40 | 1.000 | 0.042 | 4188 | 184 |
| 0.30 | 1.000 | 0.042 | 4188 | 184 |
| 0.20 | 1.000 | 0.042 | 4188 | 184 |
| 0.10 | 1.000 | 0.042 | 4188 | 184 |
| 0.00 | 1.000 | 0.042 | 4188 | 184 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1812 | 0 |
| 0.0001 | 0.9896 | 2917 | 0 |
| 0.0016 | 0.9895 | 3392 | 5 |
| 0.0021 | 0.9854 | 3551 | 7 |
| 0.0025 | 0.9752 | 3649 | 9 |
| 0.0030 | 0.9613 | 3711 | 11 |
| 0.0040 | 0.9335 | 3785 | 15 |
| 0.0050 | 0.9072 | 3830 | 19 |
| 0.0060 | 0.8813 | 3865 | 23 |
| 0.0071 | 0.8615 | 3893 | 28 |
| 0.0081 | 0.8425 | 3917 | 32 |
| 0.0090 | 0.8176 | 3936 | 36 |
| 0.0100 | 0.7975 | 3954 | 40 |
| 0.0151 | 0.7185 | 4020 | 62 |
| 0.0200 | 0.6493 | 4067 | 83 |
| 0.0250 | 0.5879 | 4103 | 105 |
| 0.0301 | 0.5403 | 4133 | 128 |
| 0.0401 | 0.4713 | 4180 | 174 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 21522 |
| num_input_3_spectra | 15321 |
| num_input_4_spectra | 3039 |
| num_input_5_spectra | 295 |
| num_predicted_correct_prots | 4187.9 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_4.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_4.pep.xml |
| total_no_spectrum_ids | 39810.4 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:32:05 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 3 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:32:15 2017 |