| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.25 | 0.040 | 0.309 | 0.13 |
| 1 | 0.25 < nsp <= 0.84 | 0.034 | 0.137 | 0.25 |
| 2 | 0.84 < nsp <= 1.57 | 0.058 | 0.132 | 0.44 |
| 3 | 1.57 < nsp <= 2.52 | 0.075 | 0.166 | 0.45 |
| 4 | 2.52 < nsp <= 3.86 | 0.090 | 0.099 | 0.91 |
| 5 | 3.86 < nsp <= 5.66 | 0.106 | 0.061 | 1.73 |
| 6 | 5.66 < nsp <= 8.64 | 0.127 | 0.043 | 2.97 |
| 7 | 8.64 < nsp <= 14.73 | 0.147 | 0.028 | 5.19 |
| 8 | 14.73 < nsp <= 28.98 | 0.160 | 0.014 | 11.41 |
| 9 | 28.98 < nsp < inf | 0.163 | 0.010 | 16.31 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.407 | 0.000 | 1503 | 0 |
| 0.99 | 0.812 | 0.001 | 2996 | 4 |
| 0.98 | 0.853 | 0.002 | 3147 | 7 |
| 0.97 | 0.867 | 0.002 | 3200 | 8 |
| 0.96 | 0.878 | 0.003 | 3239 | 9 |
| 0.95 | 0.886 | 0.003 | 3270 | 11 |
| 0.90 | 0.914 | 0.006 | 3371 | 19 |
| 0.80 | 0.944 | 0.011 | 3482 | 38 |
| 0.70 | 0.967 | 0.018 | 3567 | 66 |
| 0.60 | 0.988 | 0.029 | 3645 | 108 |
| 0.50 | 1.000 | 0.037 | 3690 | 142 |
| 0.40 | 1.000 | 0.037 | 3690 | 142 |
| 0.30 | 1.000 | 0.037 | 3690 | 142 |
| 0.20 | 1.000 | 0.037 | 3690 | 142 |
| 0.10 | 1.000 | 0.037 | 3690 | 142 |
| 0.00 | 1.000 | 0.037 | 3690 | 142 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1503 | 0 |
| 0.0001 | 0.9945 | 2475 | 0 |
| 0.0012 | 0.9923 | 2873 | 3 |
| 0.0016 | 0.9893 | 3023 | 5 |
| 0.0020 | 0.9818 | 3138 | 6 |
| 0.0025 | 0.9692 | 3206 | 8 |
| 0.0030 | 0.9569 | 3254 | 10 |
| 0.0040 | 0.9345 | 3313 | 13 |
| 0.0050 | 0.9091 | 3355 | 17 |
| 0.0060 | 0.8892 | 3387 | 21 |
| 0.0070 | 0.8682 | 3414 | 24 |
| 0.0081 | 0.8452 | 3436 | 28 |
| 0.0091 | 0.8259 | 3454 | 32 |
| 0.0101 | 0.8144 | 3472 | 35 |
| 0.0150 | 0.7403 | 3535 | 54 |
| 0.0200 | 0.6824 | 3582 | 73 |
| 0.0252 | 0.6338 | 3621 | 93 |
| 0.0301 | 0.5911 | 3652 | 113 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 17269 |
| num_input_3_spectra | 14012 |
| num_input_4_spectra | 3458 |
| num_input_5_spectra | 472 |
| num_predicted_correct_prots | 3689.9 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_40.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_40.pep.xml |
| total_no_spectrum_ids | 34861.4 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:07:20 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 8 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:07:29 2017 |