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Predicted Sensitivity and Error Rate

Learned NSP distributions

bin_number	nsp_range	pos_freq	neg_freq	pos/neg_ratio
Learned Number of Sibling Peptide Distributions
Neighboring bin smoothing: Y
0	0.00 < nsp <= 0.26	0.039	0.354	0.11
1	0.26 < nsp <= 0.84	0.035	0.142	0.25
2	0.84 < nsp <= 1.58	0.059	0.101	0.58
3	1.58 < nsp <= 2.55	0.074	0.132	0.56 (0.58)
4	2.55 < nsp <= 3.81	0.088	0.087	1.01
5	3.81 < nsp <= 5.60	0.108	0.064	1.68
6	5.60 < nsp <= 8.86	0.127	0.056	2.27
7	8.86 < nsp <= 14.74	0.148	0.035	4.22
8	14.74 < nsp <= 28.81	0.159	0.018	8.69
9	28.81 < nsp < inf	0.164	0.011	14.32

min_prob	Sensitivity	Error_Rate	num_correct	num_incorrect
Predicted Sensitivity and Error Rate
1.00	0.432	0.000	1573	0
0.99	0.807	0.002	2938	4
0.98	0.852	0.002	3101	7
0.97	0.870	0.003	3167	8
0.96	0.881	0.003	3207	10
0.95	0.889	0.003	3236	11
0.90	0.916	0.006	3333	19
0.80	0.943	0.011	3432	37
0.70	0.964	0.017	3508	62
0.60	0.981	0.026	3571	97
0.50	1.000	0.040	3637	151
0.40	1.000	0.040	3639	152
0.30	1.000	0.040	3639	152
0.20	1.000	0.040	3639	152
0.10	1.000	0.040	3639	152
0.00	1.000	0.040	3639	152

Error_Rate	min_prob	num_correct	num_incorrect
Error Table
0.0000	1.0000	1573	0
0.0013	0.9911	2856	4
0.0015	0.9902	2937	4
0.0020	0.9832	3075	6
0.0025	0.9728	3155	8
0.0030	0.9626	3203	10
0.0040	0.9380	3271	13
0.0050	0.9114	3313	17
0.0060	0.8890	3346	20
0.0070	0.8606	3371	24
0.0080	0.8377	3392	27
0.0090	0.8208	3409	31
0.0100	0.8102	3424	35
0.0150	0.7223	3485	53
0.0200	0.6639	3529	72
0.0250	0.6119	3563	91
0.0301	0.5701	3592	111
0.0401	0.4992	3638	152

protein_summary_header
initial_min_peptide_prob	0.05
min_peptide_probability	0.20
min_peptide_weight	0.50
num_input_1_spectra	0
num_input_2_spectra	16866
num_input_3_spectra	13806
num_input_4_spectra	3371
num_input_5_spectra	495
num_predicted_correct_prots	3638.5
reference_database	Cg-Giga_cont_AA.fa
residue_substitution_list	I -> L
sample_enzyme	trypsin
source_files	/home/sean/Documents/proteome/interact-20161205_Sample_40A.pep.xml
source_files_alt	/home/sean/Documents/proteome/interact-20161205_Sample_40A.pep.xml
total_no_spectrum_ids	34201.0
program_details
analysis	proteinprophet
time	2017-02-20T14:04:10
version	Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64))
proteinprophet_details
degen_flag	Y
final_peptide_wt_iters	4
fpkm_flag	N
groups_flag	Y
initial_peptide_wt_iters	2
nsp_distribution_iters	9
nsp_flag	Y
occam_flag	Y
tpp_models
time	Mon Feb 20 14:04:19 2017

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