---
Predicted Sensitivity and Error Rate
Learned NSP distributions

Learned Number of Sibling Peptide Distributions
Neighboring bin smoothing: Y
bin_numbernsp_rangepos_freqneg_freqpos/neg_ratio
00.00 < nsp <= 0.260.0390.3540.11
10.26 < nsp <= 0.840.0350.1420.25
20.84 < nsp <= 1.580.0590.1010.58
31.58 < nsp <= 2.550.0740.1320.56 (0.58)
42.55 < nsp <= 3.810.0880.0871.01
53.81 < nsp <= 5.600.1080.0641.68
65.60 < nsp <= 8.860.1270.0562.27
78.86 < nsp <= 14.740.1480.0354.22
814.74 < nsp <= 28.810.1590.0188.69
928.81 < nsp < inf0.1640.01114.32

Predicted Sensitivity and Error Rate
min_probSensitivityError_Ratenum_correctnum_incorrect
1.000.4320.00015730
0.990.8070.00229384
0.980.8520.00231017
0.970.8700.00331678
0.960.8810.003320710
0.950.8890.003323611
0.900.9160.006333319
0.800.9430.011343237
0.700.9640.017350862
0.600.9810.026357197
0.501.0000.0403637151
0.401.0000.0403639152
0.301.0000.0403639152
0.201.0000.0403639152
0.101.0000.0403639152
0.001.0000.0403639152
 
Error Table
Error_Ratemin_probnum_correctnum_incorrect
0.00001.000015730
0.00130.991128564
0.00150.990229374
0.00200.983230756
0.00250.972831558
0.00300.9626320310
0.00400.9380327113
0.00500.9114331317
0.00600.8890334620
0.00700.8606337124
0.00800.8377339227
0.00900.8208340931
0.01000.8102342435
0.01500.7223348553
0.02000.6639352972
0.02500.6119356391
0.03010.57013592111
0.04010.49923638152

protein_summary_header
initial_min_peptide_prob0.05
min_peptide_probability0.20
min_peptide_weight0.50
num_input_1_spectra0
num_input_2_spectra16866
num_input_3_spectra13806
num_input_4_spectra3371
num_input_5_spectra495
num_predicted_correct_prots3638.5
reference_databaseCg-Giga_cont_AA.fa
residue_substitution_listI -> L
sample_enzymetrypsin
source_files/home/sean/Documents/proteome/interact-20161205_Sample_40A.pep.xml
source_files_alt/home/sean/Documents/proteome/interact-20161205_Sample_40A.pep.xml
total_no_spectrum_ids34201.0
program_details
analysisproteinprophet
time2017-02-20T14:04:10
version Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64))
proteinprophet_details
degen_flagY
final_peptide_wt_iters4
fpkm_flagN
groups_flagY
initial_peptide_wt_iters2
nsp_distribution_iters9
nsp_flagY
occam_flagY
tpp_models
timeMon Feb 20 14:04:19 2017




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