| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.11 | 0.064 | 0.442 | 0.14 |
| 1 | 0.11 < nsp <= 0.46 | 0.030 | 0.132 | 0.23 |
| 2 | 0.46 < nsp <= 0.90 | 0.040 | 0.050 | 0.81 |
| 3 | 0.90 < nsp <= 1.28 | 0.070 | 0.068 | 1.02 |
| 4 | 1.28 < nsp <= 2.00 | 0.080 | 0.077 | 1.04 |
| 5 | 2.00 < nsp <= 2.92 | 0.092 | 0.079 | 1.17 |
| 6 | 2.92 < nsp <= 4.78 | 0.131 | 0.068 | 1.91 |
| 7 | 4.78 < nsp <= 7.95 | 0.157 | 0.036 | 4.32 |
| 8 | 7.95 < nsp <= 19.06 | 0.173 | 0.025 | 7.05 |
| 9 | 19.06 < nsp < inf | 0.163 | 0.022 | 7.49 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.367 | 0.000 | 976 | 0 |
| 0.99 | 0.797 | 0.002 | 2121 | 4 |
| 0.98 | 0.838 | 0.002 | 2229 | 5 |
| 0.97 | 0.852 | 0.003 | 2268 | 6 |
| 0.96 | 0.860 | 0.003 | 2288 | 7 |
| 0.95 | 0.870 | 0.004 | 2315 | 8 |
| 0.90 | 0.901 | 0.006 | 2396 | 15 |
| 0.80 | 0.936 | 0.012 | 2490 | 30 |
| 0.70 | 0.966 | 0.022 | 2569 | 57 |
| 0.60 | 0.992 | 0.034 | 2638 | 94 |
| 0.50 | 1.000 | 0.040 | 2661 | 110 |
| 0.40 | 1.000 | 0.040 | 2661 | 110 |
| 0.30 | 1.000 | 0.040 | 2661 | 110 |
| 0.20 | 1.000 | 0.040 | 2661 | 110 |
| 0.10 | 1.000 | 0.040 | 2661 | 110 |
| 0.00 | 1.000 | 0.040 | 2661 | 110 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 976 | 0 |
| 0.0013 | 0.9931 | 1977 | 3 |
| 0.0015 | 0.9924 | 2041 | 3 |
| 0.0020 | 0.9876 | 2170 | 4 |
| 0.0025 | 0.9768 | 2242 | 6 |
| 0.0030 | 0.9630 | 2283 | 7 |
| 0.0041 | 0.9413 | 2336 | 10 |
| 0.0050 | 0.9198 | 2368 | 12 |
| 0.0060 | 0.9032 | 2395 | 14 |
| 0.0070 | 0.8848 | 2416 | 17 |
| 0.0081 | 0.8725 | 2436 | 20 |
| 0.0090 | 0.8504 | 2452 | 22 |
| 0.0101 | 0.8318 | 2466 | 25 |
| 0.0151 | 0.7652 | 2519 | 39 |
| 0.0201 | 0.7149 | 2559 | 52 |
| 0.0253 | 0.6690 | 2592 | 67 |
| 0.0301 | 0.6358 | 2618 | 81 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 11128 |
| num_input_3_spectra | 5058 |
| num_input_4_spectra | 689 |
| num_input_5_spectra | 41 |
| num_predicted_correct_prots | 2660.6 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_43.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_43.pep.xml |
| total_no_spectrum_ids | 16723.4 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:12:10 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:12:14 2017 |