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Predicted Sensitivity and Error Rate

Learned NSP distributions

bin_number	nsp_range	pos_freq	neg_freq	pos/neg_ratio
Learned Number of Sibling Peptide Distributions
Neighboring bin smoothing: Y
0	0.00 < nsp <= 0.12	0.061	0.479	0.13
1	0.12 < nsp <= 0.48	0.030	0.153	0.20
2	0.48 < nsp <= 0.90	0.041	0.043	0.96
3	0.90 < nsp <= 1.33	0.075	0.048	1.57
4	1.33 < nsp <= 2.00	0.088	0.058	1.52 (1.57)
5	2.00 < nsp <= 3.00	0.091	0.058	1.56 (1.57)
6	3.00 < nsp <= 4.87	0.127	0.059	2.15
7	4.87 < nsp <= 8.36	0.160	0.046	3.49
8	8.36 < nsp <= 18.97	0.172	0.031	5.60
9	18.97 < nsp < inf	0.156	0.026	5.91

min_prob	Sensitivity	Error_Rate	num_correct	num_incorrect
Predicted Sensitivity and Error Rate
1.00	0.399	0.000	1061	0
0.99	0.785	0.002	2087	4
0.98	0.830	0.002	2208	5
0.97	0.851	0.003	2263	7
0.96	0.863	0.003	2295	8
0.95	0.870	0.004	2315	9
0.90	0.900	0.006	2396	15
0.80	0.934	0.012	2485	31
0.70	0.958	0.020	2549	51
0.60	0.982	0.032	2613	86
0.50	1.000	0.044	2660	123
0.40	1.000	0.044	2660	123
0.30	1.000	0.044	2660	123
0.20	1.000	0.044	2660	123
0.10	1.000	0.044	2660	123
0.00	1.000	0.044	2660	123

Error_Rate	min_prob	num_correct	num_incorrect
Error Table
0.0000	1.0000	1061	0
0.0015	0.9922	1999	3
0.0017	0.9914	2066	4
0.0020	0.9875	2139	4
0.0025	0.9791	2214	6
0.0030	0.9701	2263	7
0.0040	0.9466	2323	9
0.0050	0.9256	2360	12
0.0060	0.9073	2387	14
0.0070	0.8909	2410	17
0.0080	0.8688	2429	20
0.0090	0.8518	2446	22
0.0100	0.8382	2460	25
0.0150	0.7567	2513	38
0.0200	0.6986	2550	52
0.0250	0.6595	2580	66
0.0301	0.6136	2605	81
0.0401	0.5546	2646	111

protein_summary_header
initial_min_peptide_prob	0.05
min_peptide_probability	0.20
min_peptide_weight	0.50
num_input_1_spectra	0
num_input_2_spectra	11378
num_input_3_spectra	4970
num_input_4_spectra	652
num_input_5_spectra	61
num_predicted_correct_prots	2660.5
reference_database	Cg-Giga_cont_AA.fa
residue_substitution_list	I -> L
sample_enzyme	trypsin
source_files	/home/sean/Documents/proteome/interact-20161205_Sample_43A.pep.xml
source_files_alt	/home/sean/Documents/proteome/interact-20161205_Sample_43A.pep.xml
total_no_spectrum_ids	16875.2
program_details
analysis	proteinprophet
time	2017-02-20T14:09:46
version	Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64))
proteinprophet_details
degen_flag	Y
final_peptide_wt_iters	3
fpkm_flag	N
groups_flag	Y
initial_peptide_wt_iters	2
nsp_distribution_iters	9
nsp_flag	Y
occam_flag	Y
tpp_models
time	Mon Feb 20 14:09:50 2017

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