| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.22 | 0.043 | 0.459 | 0.09 |
| 1 | 0.22 < nsp <= 0.74 | 0.034 | 0.171 | 0.20 |
| 2 | 0.74 < nsp <= 1.32 | 0.056 | 0.094 | 0.59 |
| 3 | 1.32 < nsp <= 2.16 | 0.074 | 0.072 | 1.02 |
| 4 | 2.16 < nsp <= 3.15 | 0.085 | 0.052 | 1.64 |
| 5 | 3.15 < nsp <= 4.93 | 0.104 | 0.049 | 2.11 |
| 6 | 4.93 < nsp <= 7.47 | 0.127 | 0.039 | 3.23 |
| 7 | 7.47 < nsp <= 12.69 | 0.147 | 0.029 | 5.03 |
| 8 | 12.69 < nsp <= 25.39 | 0.165 | 0.019 | 8.66 |
| 9 | 25.39 < nsp < inf | 0.166 | 0.015 | 11.39 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.418 | 0.000 | 1427 | 0 |
| 0.99 | 0.663 | 0.000 | 2263 | 0 |
| 0.98 | 0.849 | 0.003 | 2897 | 8 |
| 0.97 | 0.866 | 0.003 | 2955 | 9 |
| 0.96 | 0.877 | 0.003 | 2992 | 10 |
| 0.95 | 0.885 | 0.004 | 3018 | 12 |
| 0.90 | 0.916 | 0.006 | 3126 | 20 |
| 0.80 | 0.938 | 0.010 | 3200 | 32 |
| 0.70 | 0.958 | 0.017 | 3269 | 56 |
| 0.60 | 0.976 | 0.026 | 3330 | 89 |
| 0.50 | 0.992 | 0.038 | 3383 | 133 |
| 0.40 | 1.000 | 0.046 | 3412 | 164 |
| 0.30 | 1.000 | 0.046 | 3412 | 164 |
| 0.20 | 1.000 | 0.046 | 3412 | 164 |
| 0.10 | 1.000 | 0.046 | 3412 | 164 |
| 0.00 | 1.000 | 0.046 | 3412 | 164 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1427 | 0 |
| 0.0017 | 0.9895 | 2687 | 5 |
| 0.0021 | 0.9874 | 2798 | 6 |
| 0.0025 | 0.9813 | 2883 | 7 |
| 0.0030 | 0.9711 | 2952 | 9 |
| 0.0041 | 0.9456 | 3030 | 12 |
| 0.0051 | 0.9268 | 3077 | 16 |
| 0.0060 | 0.9069 | 3112 | 19 |
| 0.0070 | 0.8861 | 3142 | 22 |
| 0.0080 | 0.8595 | 3165 | 26 |
| 0.0091 | 0.8352 | 3186 | 29 |
| 0.0100 | 0.8048 | 3200 | 32 |
| 0.0152 | 0.7220 | 3256 | 50 |
| 0.0201 | 0.6560 | 3294 | 68 |
| 0.0251 | 0.6080 | 3325 | 86 |
| 0.0302 | 0.5543 | 3352 | 104 |
| 0.0400 | 0.4885 | 3392 | 141 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 17054 |
| num_input_3_spectra | 10374 |
| num_input_4_spectra | 1887 |
| num_input_5_spectra | 214 |
| num_predicted_correct_prots | 3412.0 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_44.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_44.pep.xml |
| total_no_spectrum_ids | 29248.1 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:18:02 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 3 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 10 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:18:09 2017 |