| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.20 | 0.044 | 0.452 | 0.10 |
| 1 | 0.20 < nsp <= 0.70 | 0.035 | 0.159 | 0.22 |
| 2 | 0.70 < nsp <= 1.27 | 0.056 | 0.095 | 0.59 |
| 3 | 1.27 < nsp <= 2.09 | 0.074 | 0.079 | 0.94 |
| 4 | 2.09 < nsp <= 3.00 | 0.085 | 0.052 | 1.63 |
| 5 | 3.00 < nsp <= 4.78 | 0.101 | 0.049 | 2.05 |
| 6 | 4.78 < nsp <= 7.34 | 0.129 | 0.040 | 3.18 |
| 7 | 7.34 < nsp <= 12.81 | 0.146 | 0.031 | 4.74 |
| 8 | 12.81 < nsp <= 24.30 | 0.159 | 0.021 | 7.65 |
| 9 | 24.30 < nsp < inf | 0.171 | 0.021 | 7.99 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.409 | 0.000 | 1448 | 0 |
| 0.99 | 0.663 | 0.000 | 2349 | 0 |
| 0.98 | 0.840 | 0.002 | 2976 | 7 |
| 0.97 | 0.861 | 0.003 | 3050 | 9 |
| 0.96 | 0.874 | 0.003 | 3094 | 11 |
| 0.95 | 0.880 | 0.004 | 3117 | 12 |
| 0.90 | 0.907 | 0.006 | 3212 | 19 |
| 0.80 | 0.938 | 0.011 | 3322 | 38 |
| 0.70 | 0.959 | 0.018 | 3398 | 64 |
| 0.60 | 0.977 | 0.027 | 3462 | 98 |
| 0.50 | 0.993 | 0.040 | 3519 | 145 |
| 0.40 | 1.000 | 0.046 | 3542 | 170 |
| 0.30 | 1.000 | 0.046 | 3542 | 170 |
| 0.20 | 1.000 | 0.046 | 3542 | 170 |
| 0.10 | 1.000 | 0.046 | 3542 | 170 |
| 0.00 | 1.000 | 0.046 | 3542 | 170 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1448 | 0 |
| 0.0001 | 0.9909 | 2347 | 0 |
| 0.0017 | 0.9898 | 2793 | 5 |
| 0.0021 | 0.9878 | 2888 | 6 |
| 0.0025 | 0.9798 | 2989 | 8 |
| 0.0030 | 0.9699 | 3057 | 9 |
| 0.0040 | 0.9442 | 3132 | 13 |
| 0.0050 | 0.9242 | 3181 | 16 |
| 0.0060 | 0.8997 | 3215 | 19 |
| 0.0070 | 0.8797 | 3242 | 23 |
| 0.0080 | 0.8596 | 3266 | 26 |
| 0.0090 | 0.8419 | 3285 | 30 |
| 0.0100 | 0.8211 | 3303 | 33 |
| 0.0150 | 0.7368 | 3367 | 51 |
| 0.0201 | 0.6825 | 3412 | 70 |
| 0.0252 | 0.6278 | 3449 | 89 |
| 0.0302 | 0.5705 | 3477 | 108 |
| 0.0402 | 0.4968 | 3522 | 147 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 17794 |
| num_input_3_spectra | 10032 |
| num_input_4_spectra | 1767 |
| num_input_5_spectra | 194 |
| num_predicted_correct_prots | 3542.3 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_44A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_44A.pep.xml |
| total_no_spectrum_ids | 29501.7 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:15:03 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 3 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:15:10 2017 |