| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.26 | 0.037 | 0.448 | 0.08 |
| 1 | 0.26 < nsp <= 0.85 | 0.035 | 0.172 | 0.20 |
| 2 | 0.85 < nsp <= 1.61 | 0.060 | 0.101 | 0.59 |
| 3 | 1.61 < nsp <= 2.67 | 0.073 | 0.074 | 0.99 |
| 4 | 2.67 < nsp <= 3.97 | 0.089 | 0.060 | 1.49 |
| 5 | 3.97 < nsp <= 5.99 | 0.110 | 0.050 | 2.18 |
| 6 | 5.99 < nsp <= 8.98 | 0.130 | 0.039 | 3.37 |
| 7 | 8.98 < nsp <= 15.05 | 0.146 | 0.024 | 6.04 |
| 8 | 15.05 < nsp <= 30.63 | 0.155 | 0.017 | 9.12 |
| 9 | 30.63 < nsp < inf | 0.163 | 0.015 | 11.25 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.428 | 0.000 | 1667 | 0 |
| 0.99 | 0.691 | 0.000 | 2689 | 0 |
| 0.98 | 0.848 | 0.002 | 3298 | 8 |
| 0.97 | 0.869 | 0.003 | 3380 | 10 |
| 0.96 | 0.882 | 0.004 | 3430 | 12 |
| 0.95 | 0.888 | 0.004 | 3455 | 13 |
| 0.90 | 0.911 | 0.006 | 3543 | 20 |
| 0.80 | 0.940 | 0.011 | 3656 | 39 |
| 0.70 | 0.955 | 0.016 | 3715 | 59 |
| 0.60 | 0.970 | 0.023 | 3772 | 90 |
| 0.50 | 0.989 | 0.038 | 3848 | 153 |
| 0.40 | 1.000 | 0.050 | 3890 | 203 |
| 0.30 | 1.000 | 0.050 | 3890 | 203 |
| 0.20 | 1.000 | 0.050 | 3890 | 203 |
| 0.10 | 1.000 | 0.050 | 3890 | 203 |
| 0.00 | 1.000 | 0.050 | 3890 | 203 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1667 | 0 |
| 0.0001 | 0.9889 | 2693 | 0 |
| 0.0017 | 0.9880 | 3114 | 5 |
| 0.0020 | 0.9868 | 3189 | 6 |
| 0.0025 | 0.9798 | 3309 | 8 |
| 0.0030 | 0.9706 | 3380 | 10 |
| 0.0040 | 0.9459 | 3470 | 14 |
| 0.0050 | 0.9193 | 3520 | 18 |
| 0.0061 | 0.8921 | 3558 | 22 |
| 0.0070 | 0.8672 | 3585 | 25 |
| 0.0080 | 0.8516 | 3608 | 29 |
| 0.0091 | 0.8304 | 3629 | 33 |
| 0.0100 | 0.8110 | 3646 | 37 |
| 0.0151 | 0.7065 | 3708 | 57 |
| 0.0200 | 0.6445 | 3750 | 77 |
| 0.0251 | 0.5878 | 3783 | 97 |
| 0.0301 | 0.5460 | 3810 | 118 |
| 0.0401 | 0.4853 | 3856 | 161 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 21809 |
| num_input_3_spectra | 14241 |
| num_input_4_spectra | 2863 |
| num_input_5_spectra | 366 |
| num_predicted_correct_prots | 3890.4 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_48.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_48.pep.xml |
| total_no_spectrum_ids | 38912.0 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:25:07 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:25:16 2017 |