| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.29 | 0.039 | 0.412 | 0.09 |
| 1 | 0.29 < nsp <= 0.93 | 0.037 | 0.174 | 0.21 |
| 2 | 0.93 < nsp <= 1.66 | 0.062 | 0.112 | 0.55 |
| 3 | 1.66 < nsp <= 2.73 | 0.080 | 0.088 | 0.91 |
| 4 | 2.73 < nsp <= 4.02 | 0.094 | 0.069 | 1.36 |
| 5 | 4.02 < nsp <= 6.18 | 0.105 | 0.052 | 2.01 |
| 6 | 6.18 < nsp <= 9.86 | 0.125 | 0.037 | 3.34 |
| 7 | 9.86 < nsp <= 15.98 | 0.145 | 0.023 | 6.20 |
| 8 | 15.98 < nsp <= 31.24 | 0.155 | 0.018 | 8.78 |
| 9 | 31.24 < nsp < inf | 0.159 | 0.015 | 10.86 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.438 | 0.000 | 1791 | 0 |
| 0.99 | 0.693 | 0.000 | 2835 | 0 |
| 0.98 | 0.856 | 0.002 | 3505 | 8 |
| 0.97 | 0.874 | 0.003 | 3575 | 10 |
| 0.96 | 0.884 | 0.003 | 3618 | 12 |
| 0.95 | 0.894 | 0.004 | 3658 | 13 |
| 0.90 | 0.920 | 0.006 | 3765 | 22 |
| 0.80 | 0.946 | 0.010 | 3872 | 41 |
| 0.70 | 0.963 | 0.016 | 3940 | 63 |
| 0.60 | 0.980 | 0.025 | 4011 | 102 |
| 0.50 | 0.994 | 0.035 | 4067 | 148 |
| 0.40 | 1.000 | 0.041 | 4092 | 176 |
| 0.30 | 1.000 | 0.041 | 4092 | 176 |
| 0.20 | 1.000 | 0.041 | 4092 | 176 |
| 0.10 | 1.000 | 0.041 | 4092 | 176 |
| 0.00 | 1.000 | 0.041 | 4092 | 176 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1791 | 0 |
| 0.0015 | 0.9894 | 3272 | 5 |
| 0.0021 | 0.9853 | 3438 | 7 |
| 0.0025 | 0.9760 | 3533 | 9 |
| 0.0030 | 0.9649 | 3598 | 11 |
| 0.0040 | 0.9434 | 3681 | 15 |
| 0.0050 | 0.9190 | 3736 | 19 |
| 0.0060 | 0.8897 | 3775 | 23 |
| 0.0071 | 0.8669 | 3806 | 27 |
| 0.0080 | 0.8475 | 3827 | 31 |
| 0.0090 | 0.8282 | 3848 | 35 |
| 0.0100 | 0.8059 | 3867 | 39 |
| 0.0150 | 0.7165 | 3932 | 60 |
| 0.0200 | 0.6456 | 3977 | 81 |
| 0.0252 | 0.5978 | 4013 | 104 |
| 0.0300 | 0.5478 | 4042 | 125 |
| 0.0401 | 0.4637 | 4088 | 171 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 23782 |
| num_input_3_spectra | 13772 |
| num_input_4_spectra | 2588 |
| num_input_5_spectra | 330 |
| num_predicted_correct_prots | 4092.3 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_48A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_48A.pep.xml |
| total_no_spectrum_ids | 40113.7 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:21:39 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:21:48 2017 |