| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.27 | 0.038 | 0.415 | 0.09 |
| 1 | 0.27 < nsp <= 0.87 | 0.035 | 0.162 | 0.22 |
| 2 | 0.87 < nsp <= 1.61 | 0.059 | 0.099 | 0.60 |
| 3 | 1.61 < nsp <= 2.57 | 0.075 | 0.096 | 0.78 |
| 4 | 2.57 < nsp <= 3.93 | 0.091 | 0.082 | 1.12 |
| 5 | 3.93 < nsp <= 5.96 | 0.109 | 0.062 | 1.75 |
| 6 | 5.96 < nsp <= 8.93 | 0.126 | 0.035 | 3.59 |
| 7 | 8.93 < nsp <= 14.46 | 0.142 | 0.021 | 6.70 |
| 8 | 14.46 < nsp <= 25.79 | 0.153 | 0.014 | 11.00 |
| 9 | 25.79 < nsp < inf | 0.172 | 0.014 | 12.37 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.448 | 0.000 | 1881 | 0 |
| 0.99 | 0.696 | 0.000 | 2921 | 0 |
| 0.98 | 0.860 | 0.002 | 3611 | 8 |
| 0.97 | 0.880 | 0.003 | 3694 | 10 |
| 0.96 | 0.890 | 0.003 | 3735 | 12 |
| 0.95 | 0.897 | 0.004 | 3767 | 13 |
| 0.90 | 0.919 | 0.005 | 3859 | 21 |
| 0.80 | 0.944 | 0.010 | 3964 | 38 |
| 0.70 | 0.961 | 0.015 | 4037 | 62 |
| 0.60 | 0.976 | 0.022 | 4096 | 94 |
| 0.50 | 0.992 | 0.035 | 4163 | 150 |
| 0.40 | 1.000 | 0.043 | 4199 | 189 |
| 0.30 | 1.000 | 0.043 | 4199 | 189 |
| 0.20 | 1.000 | 0.043 | 4199 | 189 |
| 0.10 | 1.000 | 0.043 | 4199 | 189 |
| 0.00 | 1.000 | 0.043 | 4199 | 189 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1881 | 0 |
| 0.0016 | 0.9893 | 3415 | 6 |
| 0.0021 | 0.9861 | 3554 | 7 |
| 0.0025 | 0.9767 | 3654 | 9 |
| 0.0030 | 0.9643 | 3720 | 11 |
| 0.0041 | 0.9367 | 3802 | 16 |
| 0.0050 | 0.9077 | 3849 | 19 |
| 0.0060 | 0.8828 | 3884 | 23 |
| 0.0070 | 0.8633 | 3912 | 28 |
| 0.0080 | 0.8374 | 3935 | 32 |
| 0.0091 | 0.8077 | 3957 | 36 |
| 0.0101 | 0.7910 | 3973 | 40 |
| 0.0152 | 0.7008 | 4037 | 62 |
| 0.0201 | 0.6262 | 4079 | 84 |
| 0.0251 | 0.5740 | 4112 | 106 |
| 0.0300 | 0.5291 | 4140 | 128 |
| 0.0401 | 0.4676 | 4186 | 175 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 21885 |
| num_input_3_spectra | 14945 |
| num_input_4_spectra | 2830 |
| num_input_5_spectra | 347 |
| num_predicted_correct_prots | 4198.5 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_4A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_4A.pep.xml |
| total_no_spectrum_ids | 39638.9 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:28:38 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 6 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:28:47 2017 |