| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.15 | 0.041 | 0.453 | 0.09 |
| 1 | 0.15 < nsp <= 0.69 | 0.033 | 0.167 | 0.20 |
| 2 | 0.69 < nsp <= 1.27 | 0.053 | 0.080 | 0.66 |
| 3 | 1.27 < nsp <= 2.09 | 0.073 | 0.070 | 1.04 |
| 4 | 2.09 < nsp <= 3.11 | 0.086 | 0.057 | 1.49 |
| 5 | 3.11 < nsp <= 4.94 | 0.101 | 0.050 | 2.01 |
| 6 | 4.94 < nsp <= 7.84 | 0.127 | 0.050 | 2.56 |
| 7 | 7.84 < nsp <= 12.86 | 0.148 | 0.036 | 4.13 |
| 8 | 12.86 < nsp <= 24.80 | 0.167 | 0.022 | 7.43 |
| 9 | 24.80 < nsp < inf | 0.171 | 0.015 | 11.36 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.421 | 0.000 | 1491 | 0 |
| 0.99 | 0.673 | 0.000 | 2383 | 0 |
| 0.98 | 0.840 | 0.002 | 2975 | 7 |
| 0.97 | 0.861 | 0.003 | 3049 | 9 |
| 0.96 | 0.873 | 0.003 | 3091 | 11 |
| 0.95 | 0.881 | 0.004 | 3121 | 12 |
| 0.90 | 0.908 | 0.006 | 3216 | 20 |
| 0.80 | 0.935 | 0.011 | 3314 | 36 |
| 0.70 | 0.955 | 0.017 | 3385 | 60 |
| 0.60 | 0.974 | 0.027 | 3452 | 96 |
| 0.50 | 0.992 | 0.041 | 3516 | 150 |
| 0.40 | 1.000 | 0.048 | 3543 | 180 |
| 0.30 | 1.000 | 0.048 | 3543 | 180 |
| 0.20 | 1.000 | 0.048 | 3543 | 180 |
| 0.10 | 1.000 | 0.048 | 3543 | 180 |
| 0.00 | 1.000 | 0.048 | 3543 | 180 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1491 | 0 |
| 0.0016 | 0.9892 | 2780 | 5 |
| 0.0020 | 0.9870 | 2883 | 6 |
| 0.0026 | 0.9786 | 2999 | 8 |
| 0.0030 | 0.9692 | 3052 | 9 |
| 0.0040 | 0.9469 | 3130 | 13 |
| 0.0050 | 0.9256 | 3180 | 16 |
| 0.0060 | 0.9015 | 3216 | 19 |
| 0.0070 | 0.8802 | 3244 | 23 |
| 0.0081 | 0.8573 | 3268 | 27 |
| 0.0090 | 0.8347 | 3287 | 30 |
| 0.0101 | 0.8116 | 3303 | 34 |
| 0.0151 | 0.7284 | 3364 | 51 |
| 0.0201 | 0.6664 | 3406 | 70 |
| 0.0251 | 0.6182 | 3440 | 88 |
| 0.0301 | 0.5720 | 3467 | 108 |
| 0.0401 | 0.5051 | 3512 | 147 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 17465 |
| num_input_3_spectra | 11195 |
| num_input_4_spectra | 2086 |
| num_input_5_spectra | 195 |
| num_predicted_correct_prots | 3542.9 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_51.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_51.pep.xml |
| total_no_spectrum_ids | 30631.7 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:38:10 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 5 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:38:17 2017 |