| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.20 | 0.042 | 0.496 | 0.08 |
| 1 | 0.20 < nsp <= 0.73 | 0.034 | 0.178 | 0.19 |
| 2 | 0.73 < nsp <= 1.31 | 0.055 | 0.087 | 0.64 |
| 3 | 1.31 < nsp <= 2.09 | 0.073 | 0.063 | 1.16 |
| 4 | 2.09 < nsp <= 3.16 | 0.088 | 0.050 | 1.75 |
| 5 | 3.16 < nsp <= 4.99 | 0.103 | 0.043 | 2.39 |
| 6 | 4.99 < nsp <= 7.90 | 0.125 | 0.034 | 3.67 |
| 7 | 7.90 < nsp <= 13.38 | 0.149 | 0.023 | 6.53 |
| 8 | 13.38 < nsp <= 24.78 | 0.162 | 0.014 | 11.45 |
| 9 | 24.78 < nsp < inf | 0.169 | 0.011 | 15.30 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.423 | 0.000 | 1498 | 0 |
| 0.99 | 0.679 | 0.000 | 2403 | 0 |
| 0.98 | 0.847 | 0.003 | 2999 | 8 |
| 0.97 | 0.860 | 0.003 | 3046 | 9 |
| 0.96 | 0.875 | 0.004 | 3099 | 11 |
| 0.95 | 0.881 | 0.004 | 3120 | 12 |
| 0.90 | 0.906 | 0.006 | 3208 | 19 |
| 0.80 | 0.935 | 0.011 | 3311 | 37 |
| 0.70 | 0.952 | 0.017 | 3369 | 57 |
| 0.60 | 0.968 | 0.025 | 3427 | 87 |
| 0.50 | 0.987 | 0.039 | 3493 | 143 |
| 0.40 | 1.000 | 0.053 | 3540 | 197 |
| 0.30 | 1.000 | 0.053 | 3540 | 197 |
| 0.20 | 1.000 | 0.053 | 3540 | 197 |
| 0.10 | 1.000 | 0.053 | 3540 | 197 |
| 0.00 | 1.000 | 0.053 | 3540 | 197 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1498 | 0 |
| 0.0001 | 0.9890 | 2406 | 0 |
| 0.0018 | 0.9882 | 2816 | 5 |
| 0.0021 | 0.9870 | 2879 | 6 |
| 0.0025 | 0.9824 | 2978 | 8 |
| 0.0031 | 0.9699 | 3058 | 9 |
| 0.0040 | 0.9467 | 3132 | 13 |
| 0.0050 | 0.9184 | 3180 | 16 |
| 0.0060 | 0.8916 | 3213 | 20 |
| 0.0070 | 0.8726 | 3238 | 23 |
| 0.0081 | 0.8499 | 3261 | 27 |
| 0.0091 | 0.8316 | 3281 | 30 |
| 0.0100 | 0.8190 | 3296 | 33 |
| 0.0150 | 0.7239 | 3356 | 51 |
| 0.0200 | 0.6596 | 3397 | 69 |
| 0.0251 | 0.5989 | 3428 | 88 |
| 0.0301 | 0.5560 | 3454 | 107 |
| 0.0401 | 0.4907 | 3497 | 146 |
| 0.0501 | 0.4391 | 3532 | 186 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 17918 |
| num_input_3_spectra | 10810 |
| num_input_4_spectra | 1999 |
| num_input_5_spectra | 214 |
| num_predicted_correct_prots | 3540.0 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_51A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_51A.pep.xml |
| total_no_spectrum_ids | 30639.4 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:35:06 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:35:14 2017 |