| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.18 | 0.041 | 0.466 | 0.09 |
| 1 | 0.18 < nsp <= 0.73 | 0.033 | 0.170 | 0.19 |
| 2 | 0.73 < nsp <= 1.32 | 0.054 | 0.094 | 0.58 |
| 3 | 1.32 < nsp <= 2.19 | 0.073 | 0.073 | 1.00 |
| 4 | 2.19 < nsp <= 3.18 | 0.087 | 0.053 | 1.65 |
| 5 | 3.18 < nsp <= 4.97 | 0.103 | 0.045 | 2.31 |
| 6 | 4.97 < nsp <= 7.77 | 0.124 | 0.036 | 3.48 |
| 7 | 7.77 < nsp <= 12.79 | 0.151 | 0.027 | 5.67 |
| 8 | 12.79 < nsp <= 26.40 | 0.172 | 0.020 | 8.81 |
| 9 | 26.40 < nsp < inf | 0.162 | 0.017 | 9.38 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.415 | 0.000 | 1511 | 0 |
| 0.99 | 0.669 | 0.000 | 2436 | 0 |
| 0.98 | 0.845 | 0.003 | 3075 | 8 |
| 0.97 | 0.861 | 0.003 | 3136 | 10 |
| 0.96 | 0.871 | 0.004 | 3172 | 11 |
| 0.95 | 0.881 | 0.004 | 3206 | 13 |
| 0.90 | 0.905 | 0.006 | 3294 | 20 |
| 0.80 | 0.932 | 0.011 | 3394 | 37 |
| 0.70 | 0.951 | 0.017 | 3464 | 61 |
| 0.60 | 0.971 | 0.027 | 3534 | 99 |
| 0.50 | 0.989 | 0.041 | 3600 | 153 |
| 0.40 | 1.000 | 0.052 | 3641 | 199 |
| 0.30 | 1.000 | 0.052 | 3641 | 199 |
| 0.20 | 1.000 | 0.052 | 3641 | 199 |
| 0.10 | 1.000 | 0.052 | 3641 | 199 |
| 0.00 | 1.000 | 0.052 | 3641 | 199 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1511 | 0 |
| 0.0017 | 0.9888 | 2849 | 5 |
| 0.0021 | 0.9865 | 2943 | 6 |
| 0.0025 | 0.9821 | 3047 | 8 |
| 0.0030 | 0.9724 | 3123 | 9 |
| 0.0040 | 0.9492 | 3210 | 13 |
| 0.0050 | 0.9258 | 3260 | 16 |
| 0.0060 | 0.8982 | 3297 | 20 |
| 0.0070 | 0.8718 | 3324 | 23 |
| 0.0080 | 0.8519 | 3346 | 27 |
| 0.0090 | 0.8303 | 3364 | 31 |
| 0.0101 | 0.8121 | 3382 | 34 |
| 0.0150 | 0.7293 | 3443 | 52 |
| 0.0200 | 0.6718 | 3486 | 71 |
| 0.0250 | 0.6219 | 3521 | 90 |
| 0.0301 | 0.5733 | 3550 | 110 |
| 0.0401 | 0.5042 | 3597 | 150 |
| 0.0501 | 0.4469 | 3634 | 192 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 19669 |
| num_input_3_spectra | 10933 |
| num_input_4_spectra | 2201 |
| num_input_5_spectra | 196 |
| num_predicted_correct_prots | 3640.5 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_52.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_52.pep.xml |
| total_no_spectrum_ids | 32663.8 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:44:31 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 3 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:44:39 2017 |