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Predicted Sensitivity and Error Rate

Learned NSP distributions

bin_number	nsp_range	pos_freq	neg_freq	pos/neg_ratio
Learned Number of Sibling Peptide Distributions
Neighboring bin smoothing: Y
0	0.00 < nsp <= 0.20	0.041	0.480	0.09
1	0.20 < nsp <= 0.75	0.035	0.188	0.19
2	0.75 < nsp <= 1.35	0.055	0.089	0.62
3	1.35 < nsp <= 2.22	0.074	0.056	1.33
4	2.22 < nsp <= 3.27	0.088	0.045	1.95
5	3.27 < nsp <= 4.99	0.103	0.044	2.34
6	4.99 < nsp <= 7.92	0.127	0.041	3.07
7	7.92 < nsp <= 13.10	0.149	0.027	5.54
8	13.10 < nsp <= 25.93	0.167	0.017	10.08
9	25.93 < nsp < inf	0.160	0.014	11.52

min_prob	Sensitivity	Error_Rate	num_correct	num_incorrect
Predicted Sensitivity and Error Rate
1.00	0.419	0.000	1522	0
0.99	0.669	0.000	2431	0
0.98	0.838	0.003	3046	8
0.97	0.858	0.003	3119	10
0.96	0.867	0.003	3151	11
0.95	0.878	0.004	3191	13
0.90	0.901	0.006	3276	20
0.80	0.933	0.012	3393	40
0.70	0.956	0.019	3474	66
0.60	0.975	0.029	3544	104
0.50	0.990	0.040	3599	149
0.40	1.000	0.050	3635	192
0.30	1.000	0.050	3635	192
0.20	1.000	0.050	3635	192
0.10	1.000	0.050	3635	192
0.00	1.000	0.050	3635	192

Error_Rate	min_prob	num_correct	num_incorrect
Error Table
0.0000	1.0000	1522	0
0.0001	0.9906	2431	0
0.0018	0.9885	2858	5
0.0021	0.9874	2924	6
0.0025	0.9829	3028	8
0.0030	0.9740	3105	9
0.0040	0.9502	3191	13
0.0050	0.9214	3245	16
0.0060	0.8990	3279	20
0.0070	0.8784	3308	23
0.0080	0.8560	3331	27
0.0091	0.8380	3352	31
0.0100	0.8256	3368	34
0.0150	0.7455	3437	52
0.0201	0.6879	3485	71
0.0251	0.6342	3521	91
0.0300	0.5813	3552	110
0.0401	0.4984	3600	150
0.0501	0.4349	3635	192

protein_summary_header
initial_min_peptide_prob	0.05
min_peptide_probability	0.20
min_peptide_weight	0.50
num_input_1_spectra	0
num_input_2_spectra	19012
num_input_3_spectra	11285
num_input_4_spectra	2012
num_input_5_spectra	230
num_predicted_correct_prots	3635.3
reference_database	Cg-Giga_cont_AA.fa
residue_substitution_list	I -> L
sample_enzyme	trypsin
source_files	/home/sean/Documents/proteome/interact-20161205_Sample_52A.pep.xml
source_files_alt	/home/sean/Documents/proteome/interact-20161205_Sample_52A.pep.xml
total_no_spectrum_ids	32230.9
program_details
analysis	proteinprophet
time	2017-02-20T14:41:23
version	Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64))
proteinprophet_details
degen_flag	Y
final_peptide_wt_iters	5
fpkm_flag	N
groups_flag	Y
initial_peptide_wt_iters	2
nsp_distribution_iters	9
nsp_flag	Y
occam_flag	Y
tpp_models
time	Mon Feb 20 14:41:30 2017

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