| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.29 | 0.039 | 0.382 | 0.10 |
| 1 | 0.29 < nsp <= 0.89 | 0.035 | 0.148 | 0.24 |
| 2 | 0.89 < nsp <= 1.64 | 0.059 | 0.117 | 0.50 |
| 3 | 1.64 < nsp <= 2.62 | 0.074 | 0.141 | 0.52 |
| 4 | 2.62 < nsp <= 3.99 | 0.089 | 0.085 | 1.04 |
| 5 | 3.99 < nsp <= 5.83 | 0.103 | 0.052 | 1.98 |
| 6 | 5.83 < nsp <= 8.92 | 0.129 | 0.035 | 3.73 |
| 7 | 8.92 < nsp <= 15.64 | 0.148 | 0.018 | 8.13 |
| 8 | 15.64 < nsp <= 30.41 | 0.159 | 0.011 | 14.41 |
| 9 | 30.41 < nsp < inf | 0.164 | 0.010 | 16.98 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.416 | 0.000 | 1543 | 0 |
| 0.99 | 0.779 | 0.001 | 2889 | 4 |
| 0.98 | 0.843 | 0.002 | 3125 | 7 |
| 0.97 | 0.861 | 0.003 | 3195 | 9 |
| 0.96 | 0.870 | 0.003 | 3227 | 10 |
| 0.95 | 0.879 | 0.004 | 3258 | 12 |
| 0.90 | 0.907 | 0.006 | 3363 | 20 |
| 0.80 | 0.936 | 0.011 | 3470 | 38 |
| 0.70 | 0.958 | 0.018 | 3554 | 66 |
| 0.60 | 0.978 | 0.029 | 3627 | 107 |
| 0.50 | 0.996 | 0.042 | 3694 | 161 |
| 0.40 | 1.000 | 0.045 | 3709 | 176 |
| 0.30 | 1.000 | 0.045 | 3709 | 176 |
| 0.20 | 1.000 | 0.045 | 3709 | 176 |
| 0.10 | 1.000 | 0.045 | 3709 | 176 |
| 0.00 | 1.000 | 0.045 | 3709 | 176 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1543 | 0 |
| 0.0014 | 0.9903 | 2888 | 4 |
| 0.0016 | 0.9893 | 2964 | 5 |
| 0.0020 | 0.9846 | 3071 | 6 |
| 0.0025 | 0.9761 | 3163 | 8 |
| 0.0030 | 0.9641 | 3218 | 10 |
| 0.0040 | 0.9426 | 3289 | 13 |
| 0.0050 | 0.9168 | 3337 | 17 |
| 0.0060 | 0.8931 | 3372 | 20 |
| 0.0071 | 0.8720 | 3399 | 24 |
| 0.0080 | 0.8503 | 3420 | 28 |
| 0.0092 | 0.8324 | 3442 | 32 |
| 0.0100 | 0.8090 | 3457 | 35 |
| 0.0151 | 0.7430 | 3522 | 54 |
| 0.0202 | 0.6764 | 3569 | 74 |
| 0.0251 | 0.6266 | 3605 | 93 |
| 0.0301 | 0.5925 | 3636 | 113 |
| 0.0401 | 0.5136 | 3687 | 154 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 19117 |
| num_input_3_spectra | 14057 |
| num_input_4_spectra | 3204 |
| num_input_5_spectra | 449 |
| num_predicted_correct_prots | 3708.8 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_56.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_56.pep.xml |
| total_no_spectrum_ids | 36484.2 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:51:22 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:51:30 2017 |