| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.28 | 0.040 | 0.412 | 0.10 |
| 1 | 0.28 < nsp <= 0.87 | 0.035 | 0.165 | 0.21 |
| 2 | 0.87 < nsp <= 1.62 | 0.058 | 0.099 | 0.58 |
| 3 | 1.62 < nsp <= 2.66 | 0.074 | 0.079 | 0.94 |
| 4 | 2.66 < nsp <= 3.90 | 0.087 | 0.078 | 1.11 |
| 5 | 3.90 < nsp <= 5.89 | 0.103 | 0.062 | 1.66 |
| 6 | 5.89 < nsp <= 8.98 | 0.133 | 0.046 | 2.87 |
| 7 | 8.98 < nsp <= 15.48 | 0.148 | 0.025 | 5.85 |
| 8 | 15.48 < nsp <= 30.87 | 0.160 | 0.017 | 9.21 |
| 9 | 30.87 < nsp < inf | 0.162 | 0.016 | 10.40 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.435 | 0.000 | 1629 | 0 |
| 0.99 | 0.678 | 0.000 | 2540 | 0 |
| 0.98 | 0.845 | 0.002 | 3164 | 8 |
| 0.97 | 0.863 | 0.003 | 3232 | 9 |
| 0.96 | 0.876 | 0.003 | 3281 | 11 |
| 0.95 | 0.885 | 0.004 | 3314 | 13 |
| 0.90 | 0.908 | 0.006 | 3401 | 19 |
| 0.80 | 0.935 | 0.011 | 3504 | 37 |
| 0.70 | 0.958 | 0.018 | 3587 | 65 |
| 0.60 | 0.977 | 0.027 | 3658 | 103 |
| 0.50 | 0.995 | 0.041 | 3726 | 158 |
| 0.40 | 1.000 | 0.046 | 3746 | 180 |
| 0.30 | 1.000 | 0.046 | 3746 | 180 |
| 0.20 | 1.000 | 0.046 | 3746 | 180 |
| 0.10 | 1.000 | 0.046 | 3746 | 180 |
| 0.00 | 1.000 | 0.046 | 3746 | 180 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1629 | 0 |
| 0.0015 | 0.9897 | 2941 | 4 |
| 0.0015 | 0.9888 | 2944 | 4 |
| 0.0021 | 0.9856 | 3100 | 6 |
| 0.0025 | 0.9776 | 3185 | 8 |
| 0.0030 | 0.9667 | 3251 | 10 |
| 0.0040 | 0.9447 | 3330 | 14 |
| 0.0050 | 0.9181 | 3378 | 17 |
| 0.0061 | 0.8946 | 3413 | 21 |
| 0.0070 | 0.8721 | 3440 | 24 |
| 0.0080 | 0.8426 | 3461 | 28 |
| 0.0090 | 0.8249 | 3479 | 32 |
| 0.0100 | 0.8097 | 3497 | 35 |
| 0.0150 | 0.7338 | 3560 | 54 |
| 0.0200 | 0.6747 | 3606 | 74 |
| 0.0250 | 0.6271 | 3643 | 94 |
| 0.0301 | 0.5748 | 3674 | 114 |
| 0.0401 | 0.5048 | 3723 | 155 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 20081 |
| num_input_3_spectra | 13357 |
| num_input_4_spectra | 3028 |
| num_input_5_spectra | 386 |
| num_predicted_correct_prots | 3745.6 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_56A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_56A.pep.xml |
| total_no_spectrum_ids | 36493.0 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:47:57 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 3 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:48:06 2017 |