| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.31 | 0.041 | 0.390 | 0.10 |
| 1 | 0.31 < nsp <= 0.92 | 0.037 | 0.162 | 0.23 |
| 2 | 0.92 < nsp <= 1.61 | 0.058 | 0.110 | 0.53 |
| 3 | 1.61 < nsp <= 2.63 | 0.072 | 0.112 | 0.64 |
| 4 | 2.63 < nsp <= 3.89 | 0.087 | 0.067 | 1.30 |
| 5 | 3.89 < nsp <= 6.07 | 0.115 | 0.052 | 2.21 |
| 6 | 6.07 < nsp <= 8.96 | 0.124 | 0.045 | 2.73 |
| 7 | 8.96 < nsp <= 14.81 | 0.142 | 0.028 | 5.00 |
| 8 | 14.81 < nsp <= 26.99 | 0.155 | 0.018 | 8.47 |
| 9 | 26.99 < nsp < inf | 0.169 | 0.015 | 10.98 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.429 | 0.000 | 1733 | 0 |
| 0.99 | 0.793 | 0.001 | 3208 | 5 |
| 0.98 | 0.849 | 0.002 | 3433 | 8 |
| 0.97 | 0.869 | 0.003 | 3513 | 10 |
| 0.96 | 0.880 | 0.003 | 3559 | 11 |
| 0.95 | 0.888 | 0.004 | 3590 | 13 |
| 0.90 | 0.912 | 0.005 | 3689 | 20 |
| 0.80 | 0.943 | 0.011 | 3811 | 42 |
| 0.70 | 0.962 | 0.017 | 3892 | 68 |
| 0.60 | 0.979 | 0.026 | 3959 | 105 |
| 0.50 | 0.997 | 0.039 | 4032 | 164 |
| 0.40 | 1.000 | 0.042 | 4043 | 177 |
| 0.30 | 1.000 | 0.042 | 4043 | 177 |
| 0.20 | 1.000 | 0.042 | 4043 | 177 |
| 0.10 | 1.000 | 0.042 | 4043 | 177 |
| 0.00 | 1.000 | 0.042 | 4043 | 177 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1733 | 0 |
| 0.0014 | 0.9905 | 3207 | 5 |
| 0.0016 | 0.9896 | 3274 | 5 |
| 0.0020 | 0.9840 | 3394 | 7 |
| 0.0025 | 0.9748 | 3483 | 9 |
| 0.0030 | 0.9649 | 3545 | 11 |
| 0.0040 | 0.9378 | 3622 | 15 |
| 0.0050 | 0.9137 | 3671 | 19 |
| 0.0060 | 0.8861 | 3707 | 22 |
| 0.0070 | 0.8679 | 3736 | 26 |
| 0.0080 | 0.8455 | 3759 | 30 |
| 0.0090 | 0.8288 | 3780 | 34 |
| 0.0100 | 0.8132 | 3798 | 38 |
| 0.0151 | 0.7323 | 3868 | 59 |
| 0.0201 | 0.6570 | 3917 | 80 |
| 0.0250 | 0.6089 | 3954 | 101 |
| 0.0300 | 0.5632 | 3985 | 123 |
| 0.0401 | 0.4942 | 4036 | 168 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 20690 |
| num_input_3_spectra | 14294 |
| num_input_4_spectra | 2882 |
| num_input_5_spectra | 364 |
| num_predicted_correct_prots | 4043.4 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_8.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_8.pep.xml |
| total_no_spectrum_ids | 37873.5 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T14:58:12 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 14:58:21 2017 |