| +1 Models | |
|---|---|
| comments | using training data negative distributions |
| est_tot_correct | 0.0 |
| num_iterations | 21 |
| prior_probability | 0.000 |
| tot_num_spectra | 0 |
| Comet discrim score [fval] negmean: 1.00 | |
| pos model | gaussian (mean 2.00, stdev 0.40) |
| neg model | gaussian (mean 0.00, stdev 3.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010748 |
| pos_bandwidth | 0.010748 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| +2 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 24429.0 |
| num_iterations | 27 |
| prior_probability | 0.695 |
| tot_num_spectra | 45084 |
| Comet discrim score [fval] negmean: -2.00 | |
| pos model | gaussian (mean 2.98, stdev 2.11) |
| neg model | gaussian (mean -0.91, stdev 1.09) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.000, ntt=1 0.023, ntt=2 0.977) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.936, 1<=nmc<=2 0.064, nmc>=3 0.000) |
| neg model | (nmc=0 0.486, 1<=nmc<=2 0.513, nmc>=3 0.002) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010748 |
| pos_bandwidth | 0.010748 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.029, 0 0.858, 1 0.104, 2 0.009, 3 0.000) |
| neg model | (-3 0.000, -2 0.000, -1 0.306, 0 0.319, 1 0.162, 2 0.115, 3 0.098) |
| +3 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 16114.6 |
| num_iterations | 27 |
| prior_probability | 0.599 |
| tot_num_spectra | 37048 |
| Comet discrim score [fval] negmean: -1.57 | |
| pos model | gaussian (mean 4.14, stdev 2.51) |
| neg model | gaussian (mean -0.50, stdev 1.07) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.000, ntt=1 0.019, ntt=2 0.981) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.820, 1<=nmc<=2 0.180, nmc>=3 0.000) |
| neg model | (nmc=0 0.285, 1<=nmc<=2 0.706, nmc>=3 0.009) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010748 |
| pos_bandwidth | 0.010748 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.021, 0 0.775, 1 0.151, 2 0.047, 3 0.007) |
| neg model | (-3 0.000, -2 0.000, -1 0.238, 0 0.230, 1 0.198, 2 0.176, 3 0.159) |
| +4 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 3127.7 |
| num_iterations | 26 |
| prior_probability | 0.508 |
| tot_num_spectra | 8963 |
| Comet discrim score [fval] negmean: -2.04 | |
| pos model | gaussian (mean 1.96, stdev 1.53) |
| neg model | gaussian (mean -1.23, stdev 0.80) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.000, ntt=1 0.022, ntt=2 0.978) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.677, 1<=nmc<=2 0.323, nmc>=3 0.000) |
| neg model | (nmc=0 0.179, 1<=nmc<=2 0.804, nmc>=3 0.018) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010748 |
| pos_bandwidth | 0.010748 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.014, 0 0.795, 1 0.145, 2 0.040, 3 0.006) |
| neg model | (-3 0.000, -2 0.000, -1 0.238, 0 0.214, 1 0.200, 2 0.184, 3 0.164) |
| +5 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 394.7 |
| num_iterations | 27 |
| prior_probability | 0.318 |
| tot_num_spectra | 2030 |
| Comet discrim score [fval] negmean: -2.90 | |
| pos model | gaussian (mean 2.07, stdev 1.49) |
| neg model | gaussian (mean -1.74, stdev 1.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.000, ntt=1 0.026, ntt=2 0.974) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.580, 1<=nmc<=2 0.419, nmc>=3 0.000) |
| neg model | (nmc=0 0.133, 1<=nmc<=2 0.847, nmc>=3 0.020) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010748 |
| pos_bandwidth | 0.010748 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.006, 0 0.885, 1 0.102, 2 0.007, 3 0.001) |
| neg model | (-3 0.000, -2 0.000, -1 0.219, 0 0.203, 1 0.195, 2 0.203, 3 0.180) |
| +6 Models | |
| comments | using training data negative distributions |
| est_tot_correct | 0.0 |
| num_iterations | 21 |
| prior_probability | 0.000 |
| tot_num_spectra | 0 |
| Comet discrim score [fval] negmean: -5.00 | |
| pos model | gaussian (mean 4.56, stdev 1.24) |
| neg model | gaussian (mean 0.00, stdev 3.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010748 |
| pos_bandwidth | 0.010748 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| +7 Models | |
| comments | using training data negative distributions |
| est_tot_correct | 0.0 |
| num_iterations | 21 |
| prior_probability | 0.000 |
| tot_num_spectra | 0 |
| Comet discrim score [fval] negmean: -5.00 | |
| pos model | gaussian (mean 4.56, stdev 1.24) |
| neg model | gaussian (mean 0.00, stdev 3.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010748 |
| pos_bandwidth | 0.010748 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| MS run: /home/sean/Documents/proteome/20161205_Sample_8A | |
|---|---|
| msManufacturer | Thermo |
| msModel | Orbitrap Fusion Lumos |
| raw_data | .mzXML |
| raw_data_type | raw |
| sample_enzyme | |
| name | trypsin |
| specificity | cut: KR no_cut: P sense: C |
| search_summary | |
| base_name | /home/sean/Documents/proteome/20161205_Sample_8A |
| fragment_mass_type | monoisotopic |
| precursor_mass_type | monoisotopic |
| search_engine | Comet |
| search_engine_version | 2016.01 rev. 2 |
| search_id | 1 |
| search_database | |
| local_path | Cg-Giga_cont_AA.fa |
| type | AA |
| enzymatic_search_constraint | |
| enzyme | Trypsin |
| max_num_internal_cleavages | 2 |
| min_number_termini | 2 |
| Aminoacid and Terminal Modifications | |
| M | mass: 147.035385 massdiff: 15.994900 symbol: * variable: Y |
| C | mass: 160.030649 massdiff: 57.021464 variable: N |
| Search Parameters | |
| # comet_version | 2016.01 rev. 0 |
| activation_method | ALL |
| add_A_alanine | 0.000000 |
| add_B_user_amino_acid | 0.000000 |
| add_C_cysteine | 57.021464 |
| add_Cterm_peptide | 0.000000 |
| add_Cterm_protein | 0.000000 |
| add_D_aspartic_acid | 0.000000 |
| add_E_glutamic_acid | 0.000000 |
| add_F_phenylalanine | 0.000000 |
| add_G_glycine | 0.000000 |
| add_H_histidine | 0.000000 |
| add_I_isoleucine | 0.000000 |
| add_J_user_amino_acid | 0.000000 |
| add_K_lysine | 0.000000 |
| add_L_leucine | 0.000000 |
| add_M_methionine | 0.000000 |
| add_N_asparagine | 0.000000 |
| add_Nterm_peptide | 0.000000 |
| add_Nterm_protein | 0.000000 |
| add_O_ornithine | 0.000000 |
| add_P_proline | 0.000000 |
| add_Q_glutamine | 0.000000 |
| add_R_arginine | 0.000000 |
| add_S_serine | 0.000000 |
| add_T_threonine | 0.000000 |
| add_U_celenocysteinee | 0.000000 |
| add_V_valine | 0.000000 |
| add_W_tryptophan | 0.000000 |
| add_X_user_amino_acid | 0.000000 |
| add_Y_tyrosine | 0.000000 |
| add_Z_user_amino_acid | 0.000000 |
| allowed_missed_cleavage | 2 |
| clear_mz_range | 0.000000 0.000000 |
| clip_nterm_methionine | 0 |
| database_name | Cg-Giga_cont_AA.fa |
| decoy_prefix | DECOY_ |
| decoy_search | 1 |
| digest_mass_range | 600.000000 5000.000000 |
| fragment_bin_offset | 0.400000 |
| fragment_bin_tol | 1.000500 |
| isotope_error | 1 |
| mass_offsets | |
| mass_type_fragment | 1 |
| mass_type_parent | 1 |
| max_fragment_charge | 3 |
| max_precursor_charge | 6 |
| max_variable_mods_in_peptide | 5 |
| minimum_intensity | 0 |
| minimum_peaks | 10 |
| ms_level | 2 |
| nucleotide_reading_frame | 0 |
| num_enzyme_termini | 2 |
| num_output_lines | 5 |
| num_results | 100 |
| num_threads | 8 |
| output_outfiles | 0 |
| output_pepxmlfile | 1 |
| output_percolatorfile | 0 |
| output_sqtfile | 0 |
| output_sqtstream | 0 |
| output_suffix | |
| output_txtfile | 0 |
| override_charge | 0 |
| peptide_mass_tolerance | 20.000000 |
| peptide_mass_units | 2 |
| precursor_charge | 0 0 |
| precursor_tolerance_type | 1 |
| print_expect_score | 1 |
| remove_precursor_peak | 0 |
| remove_precursor_tolerance | 1.500000 |
| require_variable_mod | 0 |
| sample_enzyme_number | 1 |
| scan_range | 0 0 |
| search_enzyme_number | 1 |
| show_fragment_ions | 0 |
| skip_researching | 1 |
| spectrum_batch_size | 0 |
| theoretical_fragment_ions | 1 |
| use_A_ions | 0 |
| use_B_ions | 1 |
| use_C_ions | 0 |
| use_NL_ions | 0 |
| use_X_ions | 0 |
| use_Y_ions | 1 |
| use_Z_ions | 0 |
| variable_mod01 | 15.994900 M 0 3 -1 0 0 |
| variable_mod02 | 0.000000 X 0 3 -1 0 0 |
| variable_mod03 | 0.000000 X 0 3 -1 0 0 |
| variable_mod04 | 0.000000 X 0 3 -1 0 0 |
| variable_mod05 | 0.000000 X 0 3 -1 0 0 |
| variable_mod06 | 0.000000 X 0 3 -1 0 0 |
| variable_mod07 | 0.000000 X 0 3 -1 0 0 |
| variable_mod08 | 0.000000 X 0 3 -1 0 0 |
| variable_mod09 | 0.000000 X 0 3 -1 0 0 |
| Analysis Timestamps | |
| peptideprophet | 2017-02-20T14:52:25 (id: 1) |
| database_refresh | 2017-02-20T14:52:13 (id: 1) |
| database | Cg-Giga_cont_AA.fa |
| min_num_enz_term | 0 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 0.9999 | 0.5479 | 0.0000 | 24142 | 0 |
| 0.9990 | 0.6313 | 0.0001 | 27821 | 2 |
| 0.9900 | 0.7394 | 0.0007 | 32584 | 22 |
| 0.9800 | 0.7758 | 0.0013 | 34185 | 45 |
| 0.9500 | 0.8287 | 0.0034 | 36519 | 126 |
| 0.9000 | 0.8716 | 0.0071 | 38408 | 274 |
| 0.8500 | 0.8984 | 0.0110 | 39590 | 441 |
| 0.8000 | 0.9183 | 0.0153 | 40466 | 627 |
| 0.7500 | 0.9336 | 0.0196 | 41140 | 823 |
| 0.7000 | 0.9473 | 0.0246 | 41744 | 1051 |
| 0.6500 | 0.9549 | 0.0280 | 42079 | 1211 |
| 0.6000 | 0.9606 | 0.0311 | 42328 | 1360 |
| 0.5500 | 0.9648 | 0.0341 | 42517 | 1500 |
| 0.5000 | 0.9688 | 0.0374 | 42690 | 1658 |
| 0.4500 | 0.9726 | 0.0412 | 42859 | 1843 |
| 0.4000 | 0.9762 | 0.0456 | 43016 | 2057 |
| 0.3500 | 0.9793 | 0.0503 | 43155 | 2287 |
| 0.3000 | 0.9824 | 0.0560 | 43289 | 2567 |
| 0.2500 | 0.9853 | 0.0628 | 43419 | 2909 |
| 0.2000 | 0.9883 | 0.0718 | 43551 | 3367 |
| 0.1500 | 0.9915 | 0.0846 | 43693 | 4040 |
| 0.1000 | 0.9944 | 0.1012 | 43818 | 4935 |
| 0.0500 | 0.9972 | 0.1295 | 43944 | 6536 |
| 0.0000 | 1.0000 | 0.5268 | 44066 | 49059 |
| +2 only | ||||
| 0.9999 | 0.5184 | 0.0000 | 12665 | 0 |
| 0.9990 | 0.6117 | 0.0001 | 14944 | 1 |
| 0.9900 | 0.7330 | 0.0008 | 17905 | 14 |
| 0.9800 | 0.7737 | 0.0015 | 18900 | 28 |
| 0.9500 | 0.8339 | 0.0039 | 20372 | 79 |
| 0.9000 | 0.8795 | 0.0077 | 21485 | 166 |
| 0.8500 | 0.9074 | 0.0117 | 22166 | 263 |
| 0.8000 | 0.9287 | 0.0162 | 22688 | 373 |
| 0.7500 | 0.9431 | 0.0202 | 23039 | 474 |
| 0.7000 | 0.9554 | 0.0246 | 23340 | 588 |
| 0.6500 | 0.9630 | 0.0280 | 23525 | 677 |
| 0.6000 | 0.9680 | 0.0307 | 23647 | 750 |
| 0.5500 | 0.9718 | 0.0333 | 23739 | 818 |
| 0.5000 | 0.9746 | 0.0357 | 23808 | 881 |
| 0.4500 | 0.9775 | 0.0386 | 23879 | 959 |
| 0.4000 | 0.9807 | 0.0425 | 23957 | 1064 |
| 0.3500 | 0.9833 | 0.0464 | 24020 | 1170 |
| 0.3000 | 0.9857 | 0.0509 | 24079 | 1292 |
| 0.2500 | 0.9879 | 0.0562 | 24134 | 1436 |
| 0.2000 | 0.9902 | 0.0630 | 24189 | 1627 |
| 0.1500 | 0.9927 | 0.0737 | 24251 | 1929 |
| 0.1000 | 0.9954 | 0.0897 | 24317 | 2396 |
| 0.0500 | 0.9979 | 0.1149 | 24377 | 3165 |
| 0.0000 | 1.0000 | 0.4581 | 24429 | 20655 |
| +3 only | ||||
| 0.9999 | 0.5985 | 0.0000 | 9645 | 0 |
| 0.9990 | 0.6659 | 0.0001 | 10730 | 1 |
| 0.9900 | 0.7521 | 0.0005 | 12120 | 6 |
| 0.9800 | 0.7816 | 0.0011 | 12596 | 13 |
| 0.9500 | 0.8244 | 0.0028 | 13285 | 37 |
| 0.9000 | 0.8641 | 0.0062 | 13924 | 87 |
| 0.8500 | 0.8898 | 0.0100 | 14340 | 145 |
| 0.8000 | 0.9077 | 0.0140 | 14627 | 207 |
| 0.7500 | 0.9249 | 0.0190 | 14904 | 288 |
| 0.7000 | 0.9411 | 0.0249 | 15166 | 388 |
| 0.6500 | 0.9487 | 0.0283 | 15288 | 445 |
| 0.6000 | 0.9547 | 0.0317 | 15384 | 503 |
| 0.5500 | 0.9594 | 0.0350 | 15461 | 560 |
| 0.5000 | 0.9642 | 0.0390 | 15538 | 630 |
| 0.4500 | 0.9688 | 0.0436 | 15612 | 712 |
| 0.4000 | 0.9727 | 0.0484 | 15675 | 797 |
| 0.3500 | 0.9763 | 0.0537 | 15733 | 893 |
| 0.3000 | 0.9797 | 0.0599 | 15787 | 1006 |
| 0.2500 | 0.9831 | 0.0678 | 15842 | 1153 |
| 0.2000 | 0.9870 | 0.0792 | 15904 | 1368 |
| 0.1500 | 0.9908 | 0.0940 | 15966 | 1657 |
| 0.1000 | 0.9935 | 0.1093 | 16009 | 1964 |
| 0.0500 | 0.9967 | 0.1401 | 16061 | 2617 |
| 0.0000 | 1.0000 | 0.5650 | 16115 | 20933 |
| +4 only | ||||
| 0.9999 | 0.5422 | 0.0000 | 1696 | 0 |
| 0.9990 | 0.6234 | 0.0001 | 1950 | 0 |
| 0.9900 | 0.7349 | 0.0007 | 2298 | 2 |
| 0.9800 | 0.7705 | 0.0013 | 2410 | 3 |
| 0.9500 | 0.8180 | 0.0033 | 2558 | 9 |
| 0.9000 | 0.8553 | 0.0066 | 2675 | 18 |
| 0.8500 | 0.8803 | 0.0103 | 2753 | 29 |
| 0.8000 | 0.8993 | 0.0145 | 2813 | 41 |
| 0.7500 | 0.9114 | 0.0181 | 2850 | 53 |
| 0.7000 | 0.9230 | 0.0224 | 2887 | 66 |
| 0.6500 | 0.9310 | 0.0262 | 2912 | 78 |
| 0.6000 | 0.9392 | 0.0309 | 2937 | 94 |
| 0.5500 | 0.9443 | 0.0345 | 2954 | 105 |
| 0.5000 | 0.9524 | 0.0413 | 2979 | 128 |
| 0.4500 | 0.9577 | 0.0467 | 2995 | 147 |
| 0.4000 | 0.9623 | 0.0523 | 3010 | 166 |
| 0.3500 | 0.9673 | 0.0598 | 3026 | 192 |
| 0.3000 | 0.9733 | 0.0707 | 3044 | 232 |
| 0.2500 | 0.9789 | 0.0830 | 3062 | 277 |
| 0.2000 | 0.9828 | 0.0941 | 3074 | 319 |
| 0.1500 | 0.9873 | 0.1111 | 3088 | 386 |
| 0.1000 | 0.9919 | 0.1359 | 3102 | 488 |
| 0.0500 | 0.9955 | 0.1692 | 3114 | 634 |
| 0.0000 | 1.0000 | 0.6510 | 3128 | 5835 |
| +5 only | ||||
| 0.9999 | 0.3446 | 0.0000 | 136 | 0 |
| 0.9990 | 0.4991 | 0.0002 | 197 | 0 |
| 0.9900 | 0.6606 | 0.0012 | 261 | 0 |
| 0.9800 | 0.7080 | 0.0021 | 279 | 1 |
| 0.9500 | 0.7693 | 0.0046 | 304 | 1 |
| 0.9000 | 0.8211 | 0.0090 | 324 | 3 |
| 0.8500 | 0.8388 | 0.0119 | 331 | 4 |
| 0.8000 | 0.8577 | 0.0161 | 338 | 6 |
| 0.7500 | 0.8794 | 0.0224 | 347 | 8 |
| 0.7000 | 0.8887 | 0.0258 | 351 | 9 |
| 0.6500 | 0.8972 | 0.0299 | 354 | 11 |
| 0.6000 | 0.9098 | 0.0374 | 359 | 14 |
| 0.5500 | 0.9201 | 0.0444 | 363 | 17 |
| 0.5000 | 0.9255 | 0.0488 | 365 | 19 |
| 0.4500 | 0.9425 | 0.0654 | 372 | 26 |
| 0.4000 | 0.9488 | 0.0731 | 374 | 30 |
| 0.3500 | 0.9526 | 0.0785 | 376 | 32 |
| 0.3000 | 0.9592 | 0.0900 | 379 | 37 |
| 0.2500 | 0.9649 | 0.1019 | 381 | 43 |
| 0.2000 | 0.9722 | 0.1220 | 384 | 53 |
| 0.1500 | 0.9806 | 0.1513 | 387 | 69 |
| 0.1000 | 0.9873 | 0.1832 | 390 | 87 |
| 0.0500 | 0.9939 | 0.2339 | 392 | 120 |
| 0.0000 | 1.0000 | 0.8056 | 395 | 1635 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 7839 | 0 |
| 0.0001 | 0.9986 | 28480 | 3 |
| 0.0002 | 0.9970 | 29961 | 6 |
| 0.0003 | 0.9954 | 30830 | 9 |
| 0.0004 | 0.9939 | 31455 | 13 |
| 0.0005 | 0.9924 | 31949 | 16 |
| 0.0006 | 0.9908 | 32360 | 19 |
| 0.0007 | 0.9894 | 32709 | 23 |
| 0.0008 | 0.9878 | 33013 | 26 |
| 0.0009 | 0.9861 | 33281 | 30 |
| 0.0010 | 0.9847 | 33521 | 34 |
| 0.0015 | 0.9773 | 34477 | 52 |
| 0.0020 | 0.9699 | 35173 | 71 |
| 0.0025 | 0.9629 | 35723 | 90 |
| 0.0030 | 0.9559 | 36182 | 109 |
| 0.0040 | 0.9421 | 36921 | 148 |
| 0.0050 | 0.9279 | 37499 | 189 |
| 0.0060 | 0.9136 | 37974 | 229 |
| 0.0070 | 0.9010 | 38381 | 271 |
| 0.0080 | 0.8880 | 38735 | 313 |
| 0.0090 | 0.8744 | 39050 | 355 |
| 0.0100 | 0.8619 | 39332 | 397 |
| 0.0150 | 0.8028 | 40422 | 616 |
| 0.0200 | 0.7459 | 41195 | 841 |
| 0.0250 | 0.6960 | 41792 | 1072 |
| 0.0300 | 0.6173 | 42245 | 1307 |
| 0.0400 | 0.4677 | 42809 | 1784 |
| 0.0500 | 0.3539 | 43146 | 2272 |
| 0.0750 | 0.1856 | 43591 | 3535 |
| 0.1000 | 0.1029 | 43811 | 4869 |
| +2 only | |||
| 0.0000 | 1.0000 | 4340 | 0 |
| 0.0001 | 0.9988 | 15157 | 2 |
| 0.0002 | 0.9974 | 16094 | 3 |
| 0.0003 | 0.9960 | 16637 | 5 |
| 0.0004 | 0.9946 | 17022 | 7 |
| 0.0005 | 0.9932 | 17327 | 9 |
| 0.0006 | 0.9920 | 17581 | 11 |
| 0.0007 | 0.9906 | 17802 | 12 |
| 0.0008 | 0.9893 | 17993 | 14 |
| 0.0009 | 0.9880 | 18163 | 16 |
| 0.0010 | 0.9865 | 18316 | 18 |
| 0.0015 | 0.9799 | 18913 | 28 |
| 0.0020 | 0.9732 | 19346 | 39 |
| 0.0025 | 0.9667 | 19688 | 49 |
| 0.0030 | 0.9605 | 19974 | 60 |
| 0.0040 | 0.9483 | 20435 | 82 |
| 0.0050 | 0.9346 | 20798 | 105 |
| 0.0060 | 0.9210 | 21092 | 127 |
| 0.0070 | 0.9084 | 21338 | 151 |
| 0.0080 | 0.8956 | 21555 | 174 |
| 0.0090 | 0.8828 | 21745 | 198 |
| 0.0100 | 0.8695 | 21913 | 222 |
| 0.0150 | 0.8134 | 22568 | 344 |
| 0.0200 | 0.7517 | 23027 | 470 |
| 0.0250 | 0.6938 | 23367 | 599 |
| 0.0300 | 0.6141 | 23618 | 731 |
| 0.0400 | 0.4296 | 23909 | 997 |
| 0.0500 | 0.3106 | 24069 | 1267 |
| 0.0750 | 0.1449 | 24258 | 1968 |
| 0.1000 | 0.0758 | 24347 | 2706 |
| +3 only | |||
| 0.0000 | 1.0000 | 2875 | 0 |
| 0.0001 | 0.9981 | 11092 | 1 |
| 0.0002 | 0.9961 | 11521 | 2 |
| 0.0003 | 0.9941 | 11778 | 4 |
| 0.0004 | 0.9923 | 11961 | 5 |
| 0.0005 | 0.9902 | 12105 | 6 |
| 0.0006 | 0.9880 | 12222 | 7 |
| 0.0007 | 0.9859 | 12319 | 9 |
| 0.0008 | 0.9842 | 12406 | 10 |
| 0.0009 | 0.9827 | 12484 | 11 |
| 0.0010 | 0.9809 | 12555 | 13 |
| 0.0015 | 0.9723 | 12839 | 19 |
| 0.0020 | 0.9634 | 13047 | 26 |
| 0.0025 | 0.9552 | 13211 | 33 |
| 0.0030 | 0.9462 | 13347 | 40 |
| 0.0040 | 0.9315 | 13569 | 55 |
| 0.0050 | 0.9172 | 13748 | 69 |
| 0.0060 | 0.9027 | 13898 | 84 |
| 0.0070 | 0.8894 | 14027 | 99 |
| 0.0080 | 0.8762 | 14141 | 114 |
| 0.0090 | 0.8649 | 14244 | 130 |
| 0.0100 | 0.8505 | 14337 | 145 |
| 0.0150 | 0.7865 | 14692 | 224 |
| 0.0200 | 0.7401 | 14955 | 306 |
| 0.0250 | 0.6996 | 15170 | 390 |
| 0.0300 | 0.6209 | 15340 | 475 |
| 0.0400 | 0.4873 | 15557 | 649 |
| 0.0500 | 0.3828 | 15695 | 827 |
| 0.0750 | 0.2164 | 15884 | 1289 |
| 0.1000 | 0.1274 | 15986 | 1777 |
| +4 only | |||
| 0.0000 | 1.0000 | 563 | 0 |
| 0.0001 | 0.9986 | 2001 | 0 |
| 0.0002 | 0.9969 | 2101 | 0 |
| 0.0003 | 0.9957 | 2163 | 1 |
| 0.0004 | 0.9941 | 2210 | 1 |
| 0.0005 | 0.9929 | 2247 | 1 |
| 0.0006 | 0.9908 | 2276 | 1 |
| 0.0007 | 0.9897 | 2301 | 2 |
| 0.0008 | 0.9883 | 2323 | 2 |
| 0.0009 | 0.9862 | 2343 | 2 |
| 0.0010 | 0.9848 | 2360 | 2 |
| 0.0015 | 0.9770 | 2429 | 4 |
| 0.0020 | 0.9679 | 2475 | 5 |
| 0.0025 | 0.9619 | 2512 | 6 |
| 0.0030 | 0.9538 | 2543 | 8 |
| 0.0040 | 0.9382 | 2592 | 10 |
| 0.0050 | 0.9219 | 2629 | 13 |
| 0.0060 | 0.9098 | 2660 | 16 |
| 0.0070 | 0.8960 | 2687 | 19 |
| 0.0080 | 0.8822 | 2710 | 22 |
| 0.0090 | 0.8659 | 2731 | 25 |
| 0.0100 | 0.8521 | 2749 | 28 |
| 0.0150 | 0.7879 | 2820 | 43 |
| 0.0200 | 0.7290 | 2868 | 59 |
| 0.0250 | 0.6627 | 2906 | 75 |
| 0.0300 | 0.6115 | 2934 | 91 |
| 0.0400 | 0.5105 | 2975 | 125 |
| 0.0500 | 0.4191 | 3005 | 159 |
| 0.0750 | 0.2852 | 3051 | 249 |
| 0.1000 | 0.1837 | 3080 | 343 |
| +5 only | |||
| 0.0000 | 1.0000 | 67 | 0 |
| 0.0001 | 0.9993 | 182 | 0 |
| 0.0002 | 0.9986 | 207 | 0 |
| 0.0003 | 0.9973 | 220 | 0 |
| 0.0004 | 0.9965 | 228 | 0 |
| 0.0005 | 0.9956 | 235 | 0 |
| 0.0006 | 0.9952 | 241 | 0 |
| 0.0007 | 0.9941 | 246 | 0 |
| 0.0008 | 0.9932 | 250 | 0 |
| 0.0009 | 0.9920 | 254 | 0 |
| 0.0010 | 0.9910 | 258 | 0 |
| 0.0015 | 0.9856 | 271 | 0 |
| 0.0020 | 0.9804 | 279 | 1 |
| 0.0025 | 0.9739 | 286 | 1 |
| 0.0030 | 0.9692 | 292 | 1 |
| 0.0040 | 0.9615 | 301 | 1 |
| 0.0050 | 0.9436 | 307 | 2 |
| 0.0060 | 0.9344 | 313 | 2 |
| 0.0070 | 0.9306 | 318 | 2 |
| 0.0080 | 0.9169 | 321 | 3 |
| 0.0090 | 0.9054 | 325 | 3 |
| 0.0100 | 0.8828 | 328 | 4 |
| 0.0150 | 0.8230 | 338 | 5 |
| 0.0200 | 0.7690 | 346 | 7 |
| 0.0250 | 0.7310 | 351 | 9 |
| 0.0300 | 0.6439 | 355 | 12 |
| 0.0400 | 0.5937 | 361 | 16 |
| 0.0500 | 0.4981 | 366 | 20 |
| 0.0750 | 0.3787 | 376 | 31 |
| 0.1000 | 0.2622 | 381 | 43 |
| peptideprophet | |
|---|---|
| time | 2017-02-20T14:52:25 |
| author | AKeller@ISB |
| est_tot_num_correct | 44066.0 |
| min_prob | 0.90 |
| options | DECOY=DECOY_ MINPROB=0.9 ACCMASS |
| type | unlinked |
| version | PeptideProphet (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| inputfile | /home/sean/Documents/proteome/20161205_Sample_8A.pep.xml |
| database_refresh | |
| time | 2017-02-20T14:52:13 |
| interact | |
| time | 2017-02-20T14:51:30 |
| directory | /home/sean/Documents/proteome |
| filename | /home/sean/Documents/proteome/interact-20161205_Sample_8A.pep.xml |
| directory | /home/sean/Documents/proteome |
| inputfile | 20161205_Sample_8A.pep.xml |
| tpp_models | |
| time | Mon Feb 20 14:54:56 2017 |