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Predicted Sensitivity and Error Rate

Learned NSP distributions

bin_number	nsp_range	pos_freq	neg_freq	pos/neg_ratio
Learned Number of Sibling Peptide Distributions
Neighboring bin smoothing: Y
0	0.00 < nsp <= 0.27	0.042	0.404	0.10
1	0.27 < nsp <= 0.86	0.037	0.165	0.23
2	0.86 < nsp <= 1.59	0.059	0.106	0.55
3	1.59 < nsp <= 2.57	0.074	0.093	0.80
4	2.57 < nsp <= 3.86	0.086	0.070	1.23
5	3.86 < nsp <= 5.94	0.108	0.059	1.81
6	5.94 < nsp <= 8.90	0.123	0.040	3.05
7	8.90 < nsp <= 14.78	0.145	0.030	4.84
8	14.78 < nsp <= 26.70	0.159	0.018	8.82
9	26.70 < nsp < inf	0.168	0.013	12.51

min_prob	Sensitivity	Error_Rate	num_correct	num_incorrect
Predicted Sensitivity and Error Rate
1.00	0.432	0.000	1811	0
0.99	0.797	0.001	3336	5
0.98	0.857	0.002	3589	8
0.97	0.873	0.003	3657	10
0.96	0.883	0.003	3699	11
0.95	0.891	0.003	3731	13
0.90	0.917	0.006	3839	22
0.80	0.939	0.010	3932	38
0.70	0.963	0.017	4032	70
0.60	0.982	0.027	4114	115
0.50	0.998	0.039	4178	169
0.40	1.000	0.041	4188	179
0.30	1.000	0.041	4188	179
0.20	1.000	0.041	4188	179
0.10	1.000	0.041	4188	179
0.00	1.000	0.041	4188	179

Error_Rate	min_prob	num_correct	num_incorrect
Error Table
0.0000	1.0000	1811	0
0.0014	0.9904	3335	5
0.0017	0.9894	3417	6
0.0020	0.9856	3523	7
0.0025	0.9753	3627	9
0.0030	0.9625	3691	11
0.0040	0.9360	3768	15
0.0050	0.9140	3818	19
0.0060	0.8843	3854	23
0.0070	0.8570	3882	27
0.0080	0.8340	3904	32
0.0090	0.8133	3924	36
0.0100	0.7916	3941	40
0.0151	0.7245	4009	61
0.0200	0.6685	4058	83
0.0251	0.6171	4099	105
0.0300	0.5756	4132	128
0.0401	0.4899	4184	175

protein_summary_header
initial_min_peptide_prob	0.05
min_peptide_probability	0.20
min_peptide_weight	0.50
num_input_1_spectra	0
num_input_2_spectra	21651
num_input_3_spectra	14011
num_input_4_spectra	2693
num_input_5_spectra	327
num_predicted_correct_prots	4188.2
reference_database	Cg-Giga_cont_AA.fa
residue_substitution_list	I -> L
sample_enzyme	trypsin
source_files	/home/sean/Documents/proteome/interact-20161205_Sample_8A.pep.xml
source_files_alt	/home/sean/Documents/proteome/interact-20161205_Sample_8A.pep.xml
total_no_spectrum_ids	38318.9
program_details
analysis	proteinprophet
time	2017-02-20T14:54:47
version	Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64))
proteinprophet_details
degen_flag	Y
final_peptide_wt_iters	4
fpkm_flag	N
groups_flag	Y
initial_peptide_wt_iters	2
nsp_distribution_iters	9
nsp_flag	Y
occam_flag	Y
tpp_models
time	Mon Feb 20 14:54:56 2017

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