Learned Number of Sibling Peptide Distributions | ||||
Neighboring bin smoothing: Y | ||||
bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
---|---|---|---|---|
0 | 0.00 < nsp <= 0.27 | 0.042 | 0.404 | 0.10 |
1 | 0.27 < nsp <= 0.86 | 0.037 | 0.165 | 0.23 |
2 | 0.86 < nsp <= 1.59 | 0.059 | 0.106 | 0.55 |
3 | 1.59 < nsp <= 2.57 | 0.074 | 0.093 | 0.80 |
4 | 2.57 < nsp <= 3.86 | 0.086 | 0.070 | 1.23 |
5 | 3.86 < nsp <= 5.94 | 0.108 | 0.059 | 1.81 |
6 | 5.94 < nsp <= 8.90 | 0.123 | 0.040 | 3.05 |
7 | 8.90 < nsp <= 14.78 | 0.145 | 0.030 | 4.84 |
8 | 14.78 < nsp <= 26.70 | 0.159 | 0.018 | 8.82 |
9 | 26.70 < nsp < inf | 0.168 | 0.013 | 12.51 |
Predicted Sensitivity and Error Rate | ||||
min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
---|---|---|---|---|
1.00 | 0.432 | 0.000 | 1811 | 0 |
0.99 | 0.797 | 0.001 | 3336 | 5 |
0.98 | 0.857 | 0.002 | 3589 | 8 |
0.97 | 0.873 | 0.003 | 3657 | 10 |
0.96 | 0.883 | 0.003 | 3699 | 11 |
0.95 | 0.891 | 0.003 | 3731 | 13 |
0.90 | 0.917 | 0.006 | 3839 | 22 |
0.80 | 0.939 | 0.010 | 3932 | 38 |
0.70 | 0.963 | 0.017 | 4032 | 70 |
0.60 | 0.982 | 0.027 | 4114 | 115 |
0.50 | 0.998 | 0.039 | 4178 | 169 |
0.40 | 1.000 | 0.041 | 4188 | 179 |
0.30 | 1.000 | 0.041 | 4188 | 179 |
0.20 | 1.000 | 0.041 | 4188 | 179 |
0.10 | 1.000 | 0.041 | 4188 | 179 |
0.00 | 1.000 | 0.041 | 4188 | 179 |
Error Table | |||
Error_Rate | min_prob | num_correct | num_incorrect |
---|---|---|---|
0.0000 | 1.0000 | 1811 | 0 |
0.0014 | 0.9904 | 3335 | 5 |
0.0017 | 0.9894 | 3417 | 6 |
0.0020 | 0.9856 | 3523 | 7 |
0.0025 | 0.9753 | 3627 | 9 |
0.0030 | 0.9625 | 3691 | 11 |
0.0040 | 0.9360 | 3768 | 15 |
0.0050 | 0.9140 | 3818 | 19 |
0.0060 | 0.8843 | 3854 | 23 |
0.0070 | 0.8570 | 3882 | 27 |
0.0080 | 0.8340 | 3904 | 32 |
0.0090 | 0.8133 | 3924 | 36 |
0.0100 | 0.7916 | 3941 | 40 |
0.0151 | 0.7245 | 4009 | 61 |
0.0200 | 0.6685 | 4058 | 83 |
0.0251 | 0.6171 | 4099 | 105 |
0.0300 | 0.5756 | 4132 | 128 |
0.0401 | 0.4899 | 4184 | 175 |
protein_summary_header | |
---|---|
initial_min_peptide_prob | 0.05 |
min_peptide_probability | 0.20 |
min_peptide_weight | 0.50 |
num_input_1_spectra | 0 |
num_input_2_spectra | 21651 |
num_input_3_spectra | 14011 |
num_input_4_spectra | 2693 |
num_input_5_spectra | 327 |
num_predicted_correct_prots | 4188.2 |
reference_database | Cg-Giga_cont_AA.fa |
residue_substitution_list | I -> L |
sample_enzyme | trypsin |
source_files | /home/sean/Documents/proteome/interact-20161205_Sample_8A.pep.xml |
source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_8A.pep.xml |
total_no_spectrum_ids | 38318.9 |
program_details | |
analysis | proteinprophet |
time | 2017-02-20T14:54:47 |
version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
proteinprophet_details | |
degen_flag | Y |
final_peptide_wt_iters | 4 |
fpkm_flag | N |
groups_flag | Y |
initial_peptide_wt_iters | 2 |
nsp_distribution_iters | 9 |
nsp_flag | Y |
occam_flag | Y |
tpp_models | |
time | Mon Feb 20 14:54:56 2017 |