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Predicted Sensitivity and Error Rate

Learned NSP distributions

bin_number	nsp_range	pos_freq	neg_freq	pos/neg_ratio
Learned Number of Sibling Peptide Distributions
Neighboring bin smoothing: Y
0	0.00 < nsp <= 0.26	0.039	0.449	0.09
1	0.26 < nsp <= 0.83	0.035	0.180	0.20
2	0.83 < nsp <= 1.52	0.059	0.103	0.57
3	1.52 < nsp <= 2.50	0.071	0.070	1.01
4	2.50 < nsp <= 3.78	0.088	0.059	1.50
5	3.78 < nsp <= 5.61	0.111	0.046	2.42
6	5.61 < nsp <= 8.56	0.128	0.030	4.25
7	8.56 < nsp <= 13.93	0.142	0.022	6.51
8	13.93 < nsp <= 24.02	0.156	0.019	8.03
9	24.02 < nsp < inf	0.172	0.022	7.76 (8.03)

min_prob	Sensitivity	Error_Rate	num_correct	num_incorrect
Predicted Sensitivity and Error Rate
1.00	0.446	0.000	1822	0
0.99	0.705	0.000	2882	0
0.98	0.851	0.002	3477	8
0.97	0.869	0.003	3552	10
0.96	0.880	0.003	3598	11
0.95	0.892	0.004	3644	14
0.90	0.912	0.005	3729	20
0.80	0.940	0.010	3842	40
0.70	0.960	0.017	3925	68
0.60	0.978	0.026	3995	106
0.50	0.991	0.036	4052	153
0.40	1.000	0.045	4087	194
0.30	1.000	0.045	4087	194
0.20	1.000	0.045	4087	194
0.10	1.000	0.045	4087	194
0.00	1.000	0.045	4087	194

Error_Rate	min_prob	num_correct	num_incorrect
Error Table
0.0000	1.0000	1822	0
0.0001	0.9892	2883	0
0.0015	0.9885	3270	5
0.0017	0.9874	3346	6
0.0020	0.9840	3428	7
0.0026	0.9751	3526	9
0.0030	0.9652	3584	11
0.0040	0.9387	3664	15
0.0050	0.9096	3714	19
0.0060	0.8839	3748	23
0.0071	0.8640	3777	27
0.0081	0.8406	3799	31
0.0090	0.8264	3819	35
0.0100	0.8063	3837	39
0.0150	0.7223	3905	60
0.0202	0.6576	3954	81
0.0251	0.6056	3990	103
0.0300	0.5434	4021	124
0.0402	0.4656	4068	170

protein_summary_header
initial_min_peptide_prob	0.05
min_peptide_probability	0.20
min_peptide_weight	0.50
num_input_1_spectra	0
num_input_2_spectra	20196
num_input_3_spectra	14992
num_input_4_spectra	3059
num_input_5_spectra	312
num_predicted_correct_prots	4087.1
reference_database	Cg-Giga_cont_AA.fa
residue_substitution_list	I -> L
sample_enzyme	trypsin
source_files	/home/sean/Documents/proteome/interact-20161205_sample_1.pep.xml
source_files_alt	/home/sean/Documents/proteome/interact-20161205_sample_1.pep.xml
total_no_spectrum_ids	38203.9
program_details
analysis	proteinprophet
time	2017-02-20T13:10:43
version	Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64))
proteinprophet_details
degen_flag	Y
final_peptide_wt_iters	4
fpkm_flag	N
groups_flag	Y
initial_peptide_wt_iters	2
nsp_distribution_iters	9
nsp_flag	Y
occam_flag	Y
tpp_models
time	Mon Feb 20 13:10:52 2017

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