A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2022-08-11, 11:50 based on data in:
/gscratch/srlab/graceac9/analyses/pycno/20220810_PSC2021_trimming
General Statistics
Showing 32/32 rows and 4/6 columns.| Sample Name | % Duplication | GC content | % PF | % Adapter |
|---|---|---|---|---|
| PSC-19_R1_001 | 23.4% | 42.1% | 98.4% | 9.9% |
| PSC-23_R1_001 | 23.7% | 42.3% | 98.1% | 8.6% |
| PSC-24_R1_001 | 24.3% | 41.8% | 98.3% | 8.3% |
| PSC-34_R1_001 | 38.4% | 34.9% | 97.5% | 10.1% |
| PSC-35_R1_001 | 32.8% | 34.1% | 97.7% | 9.7% |
| PSC-36_R1_001 | 35.0% | 36.8% | 96.5% | 16.1% |
| PSC-37_R1_001 | 24.8% | 34.4% | 98.2% | 9.8% |
| PSC-38_R1_001 | 29.7% | 33.8% | 98.0% | 10.6% |
| PSC-39_R1_001 | 35.9% | 34.7% | 96.8% | 15.4% |
| PSC-40_R1_001 | 25.4% | 34.2% | 97.6% | 9.6% |
| PSC-42_R1_001 | 21.6% | 42.3% | 98.3% | 8.1% |
| PSC-43_R1_001 | 22.0% | 42.6% | 98.0% | 8.1% |
| PSC-48_R1_001 | 23.2% | 41.3% | 98.3% | 9.1% |
| PSC-49_R1_001 | 23.2% | 41.8% | 98.2% | 8.6% |
| PSC-52_R1_001 | 20.2% | 42.7% | 97.8% | 10.2% |
| PSC-54_R1_001 | 22.6% | 42.2% | 98.3% | 12.4% |
| PSC-56_R1_001 | 20.1% | 42.1% | 98.5% | 7.2% |
| PSC-57_R1_001 | 20.9% | 42.6% | 98.1% | 7.2% |
| PSC-58_R1_001 | 21.0% | 42.0% | 98.4% | 8.7% |
| PSC-59_R1_001 | 21.6% | 41.6% | 98.2% | 7.8% |
| PSC-61_R1_001 | 21.0% | 41.3% | 98.3% | 7.3% |
| PSC-63_R1_001 | 21.8% | 41.5% | 98.3% | 6.5% |
| PSC-64_R1_001 | 18.8% | 42.6% | 98.0% | 9.6% |
| PSC-67_R1_001 | 22.2% | 41.5% | 97.9% | 11.3% |
| PSC-69_R1_001 | 23.2% | 40.7% | 98.0% | 6.3% |
| PSC-71_R1_001 | 20.8% | 42.1% | 98.1% | 7.9% |
| PSC-73_R1_001 | 21.3% | 41.5% | 98.2% | 8.3% |
| PSC-75_R1_001 | 21.0% | 40.8% | 98.4% | 9.8% |
| PSC-76_R1_001 | 21.1% | 41.9% | 98.1% | 7.4% |
| PSC-78_R1_001 | 24.0% | 39.6% | 97.3% | 11.0% |
| PSC-81_R1_001 | 18.5% | 42.1% | 98.1% | 9.9% |
| PSC-83_R1_001 | 22.3% | 41.9% | 97.9% | 11.1% |
fastp
fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)
Filtered Reads
Filtering statistics of sampled reads.
Duplication Rates
Duplication rates of sampled reads.
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Insert Sizes
Insert size estimation of sampled reads.
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Sequence Quality
Average sequencing quality over each base of all reads.
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GC Content
Average GC content over each base of all reads.
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N content
Average N content over each base of all reads.
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