A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2023-12-06, 16:05 based on data in:
/gscratch/srlab/graceac9/analyses/pycno/20231206_PSC2022_trimming
General Statistics
Showing 32/32 rows and 4/6 columns.| Sample Name | % Duplication | GC content | % PF | % Adapter |
|---|---|---|---|---|
| PSC-0085_R1_001 | 28.4% | 42.3% | 98.1% | 11.2% |
| PSC-0087_R1_001 | 21.1% | 42.2% | 97.8% | 11.0% |
| PSC-0090_R1_001 | 33.0% | 41.9% | 97.4% | 11.7% |
| PSC-0093_R1_001 | 19.8% | 41.8% | 98.1% | 11.1% |
| PSC-0095_R1_001 | 20.8% | 41.8% | 98.1% | 7.0% |
| PSC-0096_R1_001 | 20.4% | 41.3% | 98.0% | 6.1% |
| PSC-0099_R1_001 | 26.5% | 41.6% | 98.0% | 9.7% |
| PSC-0105_R1_001 | 22.2% | 41.1% | 98.2% | 6.8% |
| PSC-0118_R1_001 | 30.1% | 42.2% | 98.3% | 8.8% |
| PSC-0119_R1_001 | 20.1% | 41.7% | 97.9% | 8.6% |
| PSC-0132_R1_001 | 24.7% | 41.8% | 98.1% | 7.4% |
| PSC-0141_R1_001 | 20.6% | 42.0% | 98.4% | 8.3% |
| PSC-0149_R1_001 | 23.0% | 44.4% | 98.2% | 11.3% |
| PSC-0150_R1_001 | 24.9% | 36.8% | 96.8% | 22.9% |
| PSC-0156_R1_001 | 29.3% | 40.4% | 97.7% | 11.9% |
| PSC-0174_R1_001 | 23.1% | 41.0% | 98.1% | 10.9% |
| PSC-0177_R1_001 | 22.6% | 41.7% | 98.0% | 6.1% |
| PSC-0186_R1_001 | 22.9% | 41.0% | 97.8% | 9.6% |
| PSC-0187_R1_001 | 21.9% | 41.6% | 98.1% | 9.2% |
| PSC-0188_R1_001 | 23.5% | 42.6% | 98.3% | 9.8% |
| PSC-0190_R1_001 | 20.3% | 41.7% | 98.4% | 10.5% |
| PSC-0198_R1_001 | 23.0% | 40.7% | 97.9% | 9.0% |
| PSC-0202_R1_001 | 24.4% | 40.9% | 98.3% | 10.2% |
| PSC-0203_R1_001 | 29.7% | 41.1% | 97.9% | 10.7% |
| PSC-0206_R1_001 | 24.9% | 41.2% | 98.5% | 9.6% |
| PSC-0209_R1_001 | 65.7% | 40.8% | 98.0% | 32.2% |
| PSC-0217_R1_001 | 35.4% | 40.2% | 98.2% | 8.9% |
| PSC-0219_R1_001 | 21.6% | 41.3% | 98.3% | 8.2% |
| PSC-0228_R1_001 | 20.9% | 41.3% | 98.2% | 8.8% |
| PSC-0230_R1_001 | 21.1% | 41.7% | 97.9% | 8.2% |
| PSC-0231_R1_001 | 25.0% | 44.5% | 98.0% | 8.7% |
| PSC-0235_R1_001 | 32.8% | 41.1% | 97.9% | 5.1% |
fastp
fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)
Filtered Reads
Filtering statistics of sampled reads.
Duplication Rates
Duplication rates of sampled reads.
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Insert Sizes
Insert size estimation of sampled reads.
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Sequence Quality
Average sequencing quality over each base of all reads.
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GC Content
Average GC content over each base of all reads.
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N content
Average N content over each base of all reads.
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