Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6363
Sequences without alignments under any condition 1342
Sequences that did not map uniquely 2295
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 110692
Methylated C's in CpG context 10598
Methylated C's in CHG context 834
Methylated C's in CHH context 2849
Methylated C's in Unknown context 400
Unmethylated C's in CpG context 5034
Unmethylated C's in CHG context 24437
Unmethylated C's in CHH context 66940
Unmethylated C's in Unknown context 1800
Percentage methylation (CpG context) 67.8%
Percentage methylation (CHG context) 3.3%
Percentage methylation (CHH context) 4.1%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1534 original top strand
CTOT 1703 complementary to original top strand
CTOB 1709 complementary to original bottom strand
OB 1417 original bottom strand