Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6457
Sequences without alignments under any condition 1202
Sequences that did not map uniquely 2341
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 111568
Methylated C's in CpG context 10678
Methylated C's in CHG context 827
Methylated C's in CHH context 2954
Methylated C's in Unknown context 411
Unmethylated C's in CpG context 4977
Unmethylated C's in CHG context 24762
Unmethylated C's in CHH context 67370
Unmethylated C's in Unknown context 1776
Percentage methylation (CpG context) 68.2%
Percentage methylation (CHG context) 3.2%
Percentage methylation (CHH context) 4.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1456 original top strand
CTOT 1849 complementary to original top strand
CTOB 1694 complementary to original bottom strand
OB 1458 original bottom strand