Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 3083
Sequences without alignments under any condition 5801
Sequences that did not map uniquely 1116
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 50039
Methylated C's in CpG context 4195
Methylated C's in CHG context 390
Methylated C's in CHH context 2635
Methylated C's in Unknown context 322
Unmethylated C's in CpG context 2109
Unmethylated C's in CHG context 10153
Unmethylated C's in CHH context 30557
Unmethylated C's in Unknown context 1075
Percentage methylation (CpG context) 66.5%
Percentage methylation (CHG context) 3.7%
Percentage methylation (CHH context) 7.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 723 original top strand
CTOT 808 complementary to original top strand
CTOB 793 complementary to original bottom strand
OB 759 original bottom strand