Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 3211
Sequences without alignments under any condition 5683
Sequences that did not map uniquely 1106
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 52598
Methylated C's in CpG context 4485
Methylated C's in CHG context 417
Methylated C's in CHH context 2492
Methylated C's in Unknown context 324
Unmethylated C's in CpG context 2134
Unmethylated C's in CHG context 10794
Unmethylated C's in CHH context 32276
Unmethylated C's in Unknown context 1129
Percentage methylation (CpG context) 67.8%
Percentage methylation (CHG context) 3.7%
Percentage methylation (CHH context) 7.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 756 original top strand
CTOT 906 complementary to original top strand
CTOB 859 complementary to original bottom strand
OB 690 original bottom strand