Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 5451
Sequences without alignments under any condition 2569
Sequences that did not map uniquely 1980
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 86892
Methylated C's in CpG context 8081
Methylated C's in CHG context 711
Methylated C's in CHH context 3049
Methylated C's in Unknown context 415
Unmethylated C's in CpG context 3617
Unmethylated C's in CHG context 19399
Unmethylated C's in CHH context 52035
Unmethylated C's in Unknown context 1576
Percentage methylation (CpG context) 69.1%
Percentage methylation (CHG context) 3.5%
Percentage methylation (CHH context) 5.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1311 original top strand
CTOT 1420 complementary to original top strand
CTOB 1417 complementary to original bottom strand
OB 1303 original bottom strand