Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 5481
Sequences without alignments under any condition 2531
Sequences that did not map uniquely 1988
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 87388
Methylated C's in CpG context 8135
Methylated C's in CHG context 666
Methylated C's in CHH context 3294
Methylated C's in Unknown context 448
Unmethylated C's in CpG context 3627
Unmethylated C's in CHG context 19502
Unmethylated C's in CHH context 52164
Unmethylated C's in Unknown context 1554
Percentage methylation (CpG context) 69.2%
Percentage methylation (CHG context) 3.3%
Percentage methylation (CHH context) 5.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1295 original top strand
CTOT 1452 complementary to original top strand
CTOB 1417 complementary to original bottom strand
OB 1317 original bottom strand