Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6272
Sequences without alignments under any condition 1237
Sequences that did not map uniquely 2491
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 109168
Methylated C's in CpG context 12011
Methylated C's in CHG context 784
Methylated C's in CHH context 2675
Methylated C's in Unknown context 400
Unmethylated C's in CpG context 3734
Unmethylated C's in CHG context 24189
Unmethylated C's in CHH context 65775
Unmethylated C's in Unknown context 1825
Percentage methylation (CpG context) 76.3%
Percentage methylation (CHG context) 3.1%
Percentage methylation (CHH context) 3.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1401 original top strand
CTOT 1666 complementary to original top strand
CTOB 1722 complementary to original bottom strand
OB 1483 original bottom strand