Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6387
Sequences without alignments under any condition 1162
Sequences that did not map uniquely 2451
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 111400
Methylated C's in CpG context 12185
Methylated C's in CHG context 810
Methylated C's in CHH context 2682
Methylated C's in Unknown context 401
Unmethylated C's in CpG context 3947
Unmethylated C's in CHG context 24833
Unmethylated C's in CHH context 66943
Unmethylated C's in Unknown context 1934
Percentage methylation (CpG context) 75.5%
Percentage methylation (CHG context) 3.2%
Percentage methylation (CHH context) 3.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1457 original top strand
CTOT 1712 complementary to original top strand
CTOB 1721 complementary to original bottom strand
OB 1497 original bottom strand