Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6169
Sequences without alignments under any condition 1547
Sequences that did not map uniquely 2284
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 99485
Methylated C's in CpG context 8450
Methylated C's in CHG context 690
Methylated C's in CHH context 2940
Methylated C's in Unknown context 390
Unmethylated C's in CpG context 4523
Unmethylated C's in CHG context 21587
Unmethylated C's in CHH context 61295
Unmethylated C's in Unknown context 1734
Percentage methylation (CpG context) 65.1%
Percentage methylation (CHG context) 3.1%
Percentage methylation (CHH context) 4.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1561 original top strand
CTOT 1514 complementary to original top strand
CTOB 1586 complementary to original bottom strand
OB 1508 original bottom strand