Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6188
Sequences without alignments under any condition 1494
Sequences that did not map uniquely 2318
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 99874
Methylated C's in CpG context 8463
Methylated C's in CHG context 657
Methylated C's in CHH context 2768
Methylated C's in Unknown context 385
Unmethylated C's in CpG context 4531
Unmethylated C's in CHG context 21673
Unmethylated C's in CHH context 61782
Unmethylated C's in Unknown context 1781
Percentage methylation (CpG context) 65.1%
Percentage methylation (CHG context) 2.9%
Percentage methylation (CHH context) 4.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1384 original top strand
CTOT 1716 complementary to original top strand
CTOB 1706 complementary to original bottom strand
OB 1382 original bottom strand