Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6164
Sequences without alignments under any condition 1621
Sequences that did not map uniquely 2215
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 103425
Methylated C's in CpG context 8677
Methylated C's in CHG context 799
Methylated C's in CHH context 2907
Methylated C's in Unknown context 450
Unmethylated C's in CpG context 4421
Unmethylated C's in CHG context 21895
Unmethylated C's in CHH context 64726
Unmethylated C's in Unknown context 1840
Percentage methylation (CpG context) 66.2%
Percentage methylation (CHG context) 3.5%
Percentage methylation (CHH context) 4.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1435 original top strand
CTOT 1690 complementary to original top strand
CTOB 1583 complementary to original bottom strand
OB 1456 original bottom strand