Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6202
Sequences without alignments under any condition 1537
Sequences that did not map uniquely 2261
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 103940
Methylated C's in CpG context 8868
Methylated C's in CHG context 757
Methylated C's in CHH context 2856
Methylated C's in Unknown context 433
Unmethylated C's in CpG context 4481
Unmethylated C's in CHG context 22166
Unmethylated C's in CHH context 64812
Unmethylated C's in Unknown context 1860
Percentage methylation (CpG context) 66.4%
Percentage methylation (CHG context) 3.3%
Percentage methylation (CHH context) 4.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1394 original top strand
CTOT 1706 complementary to original top strand
CTOB 1736 complementary to original bottom strand
OB 1366 original bottom strand