Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6310
Sequences without alignments under any condition 1354
Sequences that did not map uniquely 2336
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 102194
Methylated C's in CpG context 10011
Methylated C's in CHG context 703
Methylated C's in CHH context 2760
Methylated C's in Unknown context 409
Unmethylated C's in CpG context 3765
Unmethylated C's in CHG context 22238
Unmethylated C's in CHH context 62717
Unmethylated C's in Unknown context 1860
Percentage methylation (CpG context) 72.7%
Percentage methylation (CHG context) 3.1%
Percentage methylation (CHH context) 4.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1594 original top strand
CTOT 1540 complementary to original top strand
CTOB 1541 complementary to original bottom strand
OB 1635 original bottom strand